Gene
| Gene Model ID | pfu_aug2.0_345.1_17317 |
|---|---|
| Locus | scaffold345.1 : 329286 ... 346230 : + |
| To GenomeBrowser | scaffold345.1:329286..346230 |
| Genes list of scaffold | scaffold345.1 |
| Synonym | pfu_aug1.0_27545.1_33623 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| chromatin assembly factor 1 subunit a-b-like | GO:0031497 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_345.1_17317.t1 | 6 | 1 | CAF-1_p150 | 132 | 191 | 1.9e-12 | 47.0 | 3.0 | 15000.0 | -9.6 |
| pfu_aug2.0_345.1_17317.t1 | 5 | 1 | CAF1A | 137 | 171 | 4.2e-07 | 29.9 | 3.0 | 15000.0 | -6.5 |
| pfu_aug2.0_345.1_17317.t1 | 5 | 2 | CAF1A | 184 | 210 | 4.2e-07 | 29.9 | 3.0 | 15000.0 | -4.0 |
| pfu_aug2.0_345.1_17317.t1 | 3 | 1 | CAF1-p150_C2 | 216 | 259 | 3.7e-09 | 36.1 | 0.15 | 760.0 | -1.0 |
| pfu_aug2.0_345.1_17317.t1 | 6 | 2 | CAF-1_p150 | 281 | 465 | 1.9e-12 | 47.0 | 3.3e-13 | 1.6e-09 | 37.4 |
| pfu_aug2.0_345.1_17317.t1 | 5 | 3 | CAF1A | 409 | 409 | 4.2e-07 | 29.9 | 3.0 | 15000.0 | -29.0 |
| pfu_aug2.0_345.1_17317.t1 | 6 | 3 | CAF-1_p150 | 465 | 505 | 1.9e-12 | 47.0 | 3.0e-09 | 1.5e-05 | 24.5 |
| pfu_aug2.0_345.1_17317.t1 | 3 | 2 | CAF1-p150_C2 | 519 | 544 | 3.7e-09 | 36.1 | 1.1 | 5200.0 | -3.8 |
| pfu_aug2.0_345.1_17317.t1 | 5 | 4 | CAF1A | 524 | 570 | 4.2e-07 | 29.9 | 8.6e-11 | 4.2e-07 | 29.9 |
| pfu_aug2.0_345.1_17317.t1 | 6 | 4 | CAF-1_p150 | 568 | 568 | 1.9e-12 | 47.0 | 3.0 | 15000.0 | -6.2 |
| pfu_aug2.0_345.1_17317.t1 | 3 | 3 | CAF1-p150_C2 | 681 | 823 | 3.7e-09 | 36.1 | 7.4e-13 | 3.7e-09 | 36.1 |
| pfu_aug2.0_345.1_17317.t1 | 6 | 5 | CAF-1_p150 | 735 | 758 | 1.9e-12 | 47.0 | 1.5 | 7200.0 | -3.9 |
| pfu_aug2.0_345.1_17317.t1 | 5 | 5 | CAF1A | 736 | 754 | 4.2e-07 | 29.9 | 3.0 | 15000.0 | -4.3 |
| pfu_aug2.0_345.1_17317.t1 | 6 | 6 | CAF-1_p150 | 820 | 841 | 1.9e-12 | 47.0 | 1.5 | 7600.0 | -4.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_345.1_17317.t1 | gi|291221770|ref|XP_002730891.1| | PREDICTED: chromatin assembly factor 1 subunit A-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_345.1_17317.t1 | gi|390358569|ref|XP_789313.2| | PREDICTED: chromatin assembly factor 1 subunit A isoform X1 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_345.1_17317.t1 | gi|524913743|ref|XP_005111696.1| | PREDICTED: chromatin assembly factor 1 subunit A-B-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_345.1_17317.t1 | gi|260814696|ref|XP_002602050.1| | hypothetical protein BRAFLDRAFT_94449 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_345.1_17317.t1 | gi|196012995|ref|XP_002116359.1| | hypothetical protein TRIADDRAFT_60375 [Trichoplax adhaerens] | 6.0e-36 |
Transcript
| Transcript ID | pfu_aug2.0_345.1_17317.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_345.1_17317.t1 atgcagtcaccagaagaaaatgatgctgggcctcaagctaagaaattgaagcagacagacctgatgcagtttaagcaagc tcgattaccttttgtggctcttgatcaaaagcaaacccaaataccaggaagcacaccaccaggatcaaagaaacggaaat tatctgatggagaatcccccagtgccaaaccaccaaagacacacaaatctgtggtgatagaaaagccaagtattgtggaa aatgatccggaggtcagctcaagctcagaggcagagaatgttcctctacaaaatctgaaatctagagtcagaaacacact ggaaagatttgtccgtaagaattcacacgaagaaattacttcaacgaaagacgagatatcttcgacaatcgattgtgtcg acttaactgatagtaatgatgggataaaggatgaagaaaaaagtagcgataaaactattgaaaaagaagagaaggaagaa aataaggaaaatgaatgccagaaagaagatgaagtaaatgaaaagcaagaaaaagttttagaagatagaagtaatgaaga tcggggggaggaggaggttggtacatcctctatggaggtggatgacggagaaaaggattccaagtcagatggaaacacgt cagtgtcagatacggataggaagaggaacatatctgaagtttctacagggtctgtggaggaggagttcaccacacccgca aaacaacgactacagacctcactgattactacacctagttcagagacaaagacccctatatcacctgacagtcttgataa cagccagagtgatgccacacccaagtcctctaaaaccaaaactcctagaaggacacctagttcagagacaaagaccccta tatcacctgacagtcttgataacagccagagtgatgccacacccaagtcctctaaaaccaaaactcctagaaggttatct gacgtgcagaaaaaggagaaggagatcatgcgacagagaataaaagaacaaaaggaaaaagaaagagaggaaaagaaaaa acagaaggaacaggaaaggttagcaaaagaggcagaaagagaaaaacaaaagaaagaaagagaagatgccaaagctgaga aagaaaaacagaagaaagaggctcaggaaaaaagagagaaagatagacaagaaaaacagcaacaaaaagaagaagaaaaa agaaagaaacaggaaattatagatgcaaaacaagaagaaaagaggaaaaaggaggaggagaagaaacaaaaagaagaaga aaagaggaaagaagaagaagagaagaaaatgaaggagatgaaagtaaaggagagttttactaacttctttatcaagtcta aaacctcacccgtctcaaagaaaatgaaggagatgaaagtaaaggagagttttactaacttctttatcaagtctaaaacc tcacccgtctcaaagccaagcaagtcctcctctggactatttatgccgtttgaactgaagaaagacatgtttttggcccc ggagaaaagggagcagcttgatgaggatgctaaaagtcagctagactcactgatacagagtcaggatttatttgattatg aagtggacagtgatgatgaatgggaagaggaagaaccaggggagagtttatcagcttcagagggcgaggaagaaaaagat gagaatagtgatgatgaagaagaggatggctggatggtgcctcatggttacctttctgaaggagagggctgtgatgatga tgaagaaattacaccagaggttatgaaggctcgacagaaagcaagagccgaccaatgggagagtgagctgaaaagacaaa cccaacctgtactccccataatcataggttgcttctgggaacatgctgtacacagtctacagaaagaggtggaagaaaaa ctcaaagattacaagatacaaacttcatacagtggagcaaagtcagagaaaggttcttcatctaacggcaatggtgataa agatgatacgtctaaagtcaaccctcagatcaaaccagtgccagaggaagcaatgccagaccttatccgattggttcatg gaaatttagcaggaattaaaaaactcatcaaggaattcagaatgttctggaaaatgaagacatgtaaagataaaggggag ttggaaatttcagctgatgttagcatggaagaggaaggcagtaaaactgaagtgatggacatctcagcaaaaacagatgt agaaatgatggagcaagaaaagactgaaaaaaacaactcaaattttacgatctcaaaacgtcagctagaaatcaaaataa atgctatagcaataagggagaagagggaaccatttaagaagatatgttggtatgtacatgatgctgttatgaagcagtac aatatgccggaactgcctgtacctagcacttgggagtttgtaagtcagcctgcaaagacgccaaacaaacccaaggtgga ggagcaacctaactcaggacgtaaaacaccgacagtgtccatcactcagtttgctaagccgatgtcaccctctgctagac aggctcagttcgctgctgctaatgctgctgcattggcagaaaaaagaaagccatggaggctgctgcagcattag |
|
Protein
| Protein ID | pfu_aug2.0_345.1_17317.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_345.1_17317.t1 MQSPEENDAGPQAKKLKQTDLMQFKQARLPFVALDQKQTQIPGSTPPGSKKRKLSDGESPSAKPPKTHKSVVIEKPSIVE NDPEVSSSSEAENVPLQNLKSRVRNTLERFVRKNSHEEITSTKDEISSTIDCVDLTDSNDGIKDEEKSSDKTIEKEEKEE NKENECQKEDEVNEKQEKVLEDRSNEDRGEEEVGTSSMEVDDGEKDSKSDGNTSVSDTDRKRNISEVSTGSVEEEFTTPA KQRLQTSLITTPSSETKTPISPDSLDNSQSDATPKSSKTKTPRRTPSSETKTPISPDSLDNSQSDATPKSSKTKTPRRLS DVQKKEKEIMRQRIKEQKEKEREEKKKQKEQERLAKEAEREKQKKEREDAKAEKEKQKKEAQEKREKDRQEKQQQKEEEK RKKQEIIDAKQEEKRKKEEEKKQKEEEKRKEEEEKKMKEMKVKESFTNFFIKSKTSPVSKKMKEMKVKESFTNFFIKSKT SPVSKPSKSSSGLFMPFELKKDMFLAPEKREQLDEDAKSQLDSLIQSQDLFDYEVDSDDEWEEEEPGESLSASEGEEEKD ENSDDEEEDGWMVPHGYLSEGEGCDDDEEITPEVMKARQKARADQWESELKRQTQPVLPIIIGCFWEHAVHSLQKEVEEK LKDYKIQTSYSGAKSEKGSSSNGNGDKDDTSKVNPQIKPVPEEAMPDLIRLVHGNLAGIKKLIKEFRMFWKMKTCKDKGE LEISADVSMEEEGSKTEVMDISAKTDVEMMEQEKTEKNNSNFTISKRQLEIKINAIAIREKREPFKKICWYVHDAVMKQY NMPELPVPSTWEFVSQPAKTPNKPKVEEQPNSGRKTPTVSITQFAKPMSPSARQAQFAAANAAALAEKRKPWRLLQH |
|