Gene
| Gene Model ID | pfu_aug2.0_3458.1_29108 |
|---|---|
| Locus | scaffold3458.1 : 24466 ... 52076 : + |
| To GenomeBrowser | scaffold3458.1:24466..52076 |
| Genes list of scaffold | scaffold3458.1 |
| Synonym | pfu_aug1.0_39955.1_12394 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3458.1_29108.t1 | 7 | 1 | Laminin_EGF | 2 | 17 | 1.7e-40 | 136.7 | 0.0018 | 5.3 | 7.0 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 2 | Laminin_EGF | 27 | 67 | 1.7e-40 | 136.7 | 5.9e-12 | 1.8e-08 | 34.2 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 3 | Laminin_EGF | 74 | 128 | 1.7e-40 | 136.7 | 7.0e-11 | 2.1e-07 | 30.7 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 4 | Laminin_EGF | 131 | 181 | 1.7e-40 | 136.7 | 2.3e-09 | 6.9e-06 | 25.8 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 5 | Laminin_EGF | 184 | 228 | 1.7e-40 | 136.7 | 2.8e-08 | 8.3e-05 | 22.4 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 6 | Laminin_EGF | 231 | 274 | 1.7e-40 | 136.7 | 2.6e-10 | 7.7e-07 | 28.9 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 7 | Laminin_EGF | 277 | 323 | 1.7e-40 | 136.7 | 9.7e-09 | 2.9e-05 | 23.9 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 1 | Laminin_II | 325 | 380 | 6.8e-20 | 71.2 | 0.21 | 620.0 | 0.0 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 2 | Laminin_II | 431 | 457 | 6.8e-20 | 71.2 | 1.2 | 3600.0 | -2.4 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 3 | Laminin_II | 528 | 578 | 6.8e-20 | 71.2 | 0.42 | 1300.0 | -0.9 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 4 | Laminin_II | 590 | 661 | 6.8e-20 | 71.2 | 0.0019 | 5.7 | 6.6 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 5 | Laminin_II | 636 | 720 | 6.8e-20 | 71.2 | 0.12 | 360.0 | 0.8 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 6 | Laminin_II | 751 | 882 | 6.8e-20 | 71.2 | 2.3e-23 | 6.8e-20 | 71.2 |
| pfu_aug2.0_3458.1_29108.t1 | 6 | 1 | Laminin_G_2 | 887 | 902 | 0.0 | 384.4 | 1.2 | 3600.0 | -2.1 |
| pfu_aug2.0_3458.1_29108.t1 | 6 | 1 | Laminin_G_1 | 888 | 908 | 0.0 | 382.1 | 1.2 | 3600.0 | -2.1 |
| pfu_aug2.0_3458.1_29108.t1 | 7 | 7 | Laminin_II | 911 | 940 | 6.8e-20 | 71.2 | 0.0064 | 19.0 | 5.0 |
| pfu_aug2.0_3458.1_29108.t1 | 5 | 1 | Laminin_G_3 | 920 | 1060 | 4.8e-22 | 78.8 | 0.00017 | 0.5 | 10.5 |
| pfu_aug2.0_3458.1_29108.t1 | 6 | 2 | Laminin_G_2 | 945 | 1085 | 0.0 | 384.4 | 2.3e-21 | 6.8e-18 | 64.9 |
| pfu_aug2.0_3458.1_29108.t1 | 6 | 2 | Laminin_G_1 | 945 | 1088 | 0.0 | 382.1 | 1.9e-22 | 5.8e-19 | 68.4 |
| pfu_aug2.0_3458.1_29108.t1 | 6 | 3 | Laminin_G_2 | 1145 | 1266 | 0.0 | 384.4 | 2.1e-31 | 6.2e-28 | 97.3 |
| pfu_aug2.0_3458.1_29108.t1 | 6 | 3 | Laminin_G_1 | 1145 | 1267 | 0.0 | 382.1 | 1.1e-29 | 3.3e-26 | 91.8 |
| pfu_aug2.0_3458.1_29108.t1 | 5 | 2 | Laminin_G_3 | 1181 | 1265 | 4.8e-22 | 78.8 | 2.5e-07 | 0.00073 | 19.7 |
| pfu_aug2.0_3458.1_29108.t1 | 5 | 3 | Laminin_G_3 | 1298 | 1442 | 4.8e-22 | 78.8 | 6.0e-06 | 0.018 | 15.3 |
| pfu_aug2.0_3458.1_29108.t1 | 6 | 4 | Laminin_G_2 | 1320 | 1445 | 0.0 | 384.4 | 1.9e-20 | 5.6e-17 | 61.9 |
| pfu_aug2.0_3458.1_29108.t1 | 6 | 4 | Laminin_G_1 | 1321 | 1445 | 0.0 | 382.1 | 2.7e-20 | 8.0e-17 | 61.4 |
| pfu_aug2.0_3458.1_29108.t1 | 6 | 5 | Laminin_G_2 | 1519 | 1621 | 0.0 | 384.4 | 2.4e-26 | 7.0e-23 | 81.0 |
| pfu_aug2.0_3458.1_29108.t1 | 6 | 5 | Laminin_G_1 | 1519 | 1624 | 0.0 | 382.1 | 3.8e-28 | 1.1e-24 | 86.8 |
| pfu_aug2.0_3458.1_29108.t1 | 5 | 4 | Laminin_G_3 | 1522 | 1618 | 4.8e-22 | 78.8 | 3.2e-06 | 0.0096 | 16.1 |
| pfu_aug2.0_3458.1_29108.t1 | 5 | 5 | Laminin_G_3 | 1643 | 1774 | 4.8e-22 | 78.8 | 7.4e-07 | 0.0022 | 18.2 |
| pfu_aug2.0_3458.1_29108.t1 | 6 | 6 | Laminin_G_2 | 1650 | 1774 | 0.0 | 384.4 | 4.2e-25 | 1.3e-21 | 77.0 |
| pfu_aug2.0_3458.1_29108.t1 | 6 | 6 | Laminin_G_1 | 1651 | 1776 | 0.0 | 382.1 | 5.5e-22 | 1.6e-18 | 66.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3458.1_29108.t1 | gi|350408641|ref|XP_003488468.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3458.1_29108.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3458.1_29108.t1 atgggatcatcatgtcagagctgtgctgagggttattacagatccacaaggtctccttatcttggtgcatgtgtaccctg tgaatgttatggacattctaacaagtgtgattctgagacaggacaatgtctgaactgcactgacaacacaatgggacgtc actgtgagttatgtttacctggtcactatggcgatgccaccacaggggtttgtcagatctgtagctgtccactacctatc cctggaaacaattttgcatcaagatgtgatgtgatcagtggacaagtgatttcatgtgattgtcaagaaggatatacagg ccaactctgtgacagatgttcccctggttactatggagaccctaggacagttggtgagatctgccgtccttgccagtgtt ctggtaacatcgacacacgcgacccttatgcttgtgacttggctaccggagaatgtctgagatgtctgaataacacaaca ggacctaactgtgcttactgtcaggaatggttccatggtgatgctgtcaatgccaaggactgcagatcttgtgattgtga ccaatgtggttcatcatcctgtgacagagatagtggtacatgtacatgtaaacctaatgttgtgggacctacctgctctc agtgtgctcctgatacgtatggtttctccggatgtaatggatgccgggattgtaactgtggagcggcatctgtacagtca cagtgtgatgataacggacagtgtacgtgccaaccaggagtaacgggacgtgcctgtgatatgtgtatagaggggtactg gaattatggacccagtggatgtcaagaatgtcaatgtgaagatgatggtgcaatcacatgtaacaatgtgacaggtcgat gccagtgtttgccaggtgttgtaggtgatagatgtgacagatgtgcacctagatgggtgcttgtacctaacagaggatgt caagagtgtgacagttgtgtccatattctcctggatgatgttgaagtattagagaggaacatttcccggctatctatcaa cttagagagcgtctccattggtgtcactgcctttaagagacttgaagacataaacaatacagtatatgagcttaggcccc atgttgatgacttacttagcggagcgcaggacattgccttaggcccattacaagaggctgtcagagaattacaaaccgaa gcagatgatggaaaattcaagtcggagtctgtagccggtgatggagaaaacactgtaaatgttgctagaacacttttcaa cgaggcttacaatacagatgctctagctaatgataccaatgctcaagctctcgccgcagtgcagcaagccaaagatgttc tagagaatgttgagaagggtatacaagtaacaaacattgaaacttacattacccagtctgagatgatcctgaatgaaatc ctaacttcagtcttattgatgcttacaacaggacagaaagggaacatgaactcacatttgaactattgtattttgttggc aaaactacgcatcttgattaggactccggaaaatcaaatgaacaaatcacgagcaatcatgaaatccttagctgatatcc agaggagactgtatgacttacagcaggaaacaaggcactctactaatgatgctgatgatgccgattatattatagaacga ttgaaaacaacagctttgaacttactgaaggctaagcttggatctattgatatgactaacacagatatcaatatggtatt agatatgtcaaggaaactcttggatgatgcactggagttcttacgtataacaaatgcaacacgagatgaggtagaggcta aagcatcgagtatggaccaggcccttaaagccctgaggaactttgtgggtaatatcactaacgggatacaagacgctgag aagatgctgaatgaaagtcaagtacatgccaagaacctcaaagaccaggcagatttcctagaaaatgtatacactgacac cagagatacagcagctaatgccctgaaagcggcccaagcgtatcaaaacatcgtagatgccattattgatgcttacaatg cctcaacatccgctaacagtgccgctgaccaggcactggctaagtcaaatggagtaggtaatagaaccaaagaatccaaa gaaacgagcagtagtctgctagatgctgccagagacagatatggcaaaacaaaacaagctcaagtttctgcccgggctaa tgcggctgcaaacaaagcagaccgagccaatcagagggccctggatgcccgcgctcaggtagcacctgtactgagtaagc ttccacaggacaggcagaaaatagagaggttagccaatgccgtggctcagactaacagggatgtgtatgatgccaccaat caaaacaactatgtgaaggattctctacctaagatcagacagcttatagacctgattggtgagaaggccagttctgtaga caccctgaaaaacaatctcctgactaatctcactcgtcttcgggagcagatcaccatcgccagagaagcagctaacagga ttcgtgttggcatggagttccttggcaataccactgttcagctacgtaaccctgagaacgtggaccaagctggaagttac accacgctatctatgtacatacagacacgccaacagaatgccatgctggcctacgtgggtgcagaaatgattgatggaag acccacatcacctattcgtgttggcatggagttccttggcaataccactgttcagctacgtaaccctgagaacgtggacc aagctggaagttacaccacgctatctatgtacatacagacacgccaacagaatgccatgctggcctacgtgggtgcagaa atgattgatggaagacccacatcacctgaccatatggcattagagctgaggaatggtagaccagtgttcttgtttgacct tggatctggacaagtggccataccaagtaccagagatgtatcagacggacagtggtacaaaatcactgctcagaggattg gtaaagtaggtacactaacagtggagggagacccagagaagggtatacctaaggacattgtcagtggagagtcgggtggt acctatactgtactggaacttaaccctgtcaccaccagattctacatgggtggtactcctagtgacttcaggcttccagc aggagtgacttctattttctatgagggaataatggagcaagtagaatttgatgataagcctatgggattatggaactttg tgtacggagaaaataactacctgggtgctacagagagagatgtaatgaaaacagtggtatctaacggattccggttcaac ggcaagggctatgtaattcttagtgcaagacgactaaatgtcaactctaaggaatctgacatcatccttgatttcaagac gtacgctgaagatggtctcattctgttcatgggcaaaggtcgtgattttacatctattgaaatccgtaaaggaaagatcc tgttccagtatgatctaggtggaatgcctgccaagctcatgtcaaataaaacttacaatgatggaaagtggcacaaaatc caagctcagagacaagaaaaacgtgggggacttactattgatggaactttagtaacaacaggagaatcccctggaaccat gacagacatgtcatttgaagatgatgtgtttattggaggttataatcaacttattgtcaatgtcaatggtgtgaactcta gaggctttgatggctgcatacgaaatgtacagtttggtaccaacatatatgatctgaatattaataagggagccaagggt gtggtcagaggatgccctgaacagattttgagaacagctagtttttctgcaaacagaaatggttacatcaagttacctct tgattctattggtgaaaactttgatatgacgttcagactgaaaaccaaatcggacagcagccttattgcttatacatcta gcaacaatcagaactctggattctctgtgtcaacaaatgatggtaaaatcataatcatcagtgattctggtaatgatcct gtagtgttagagtctactgtcaatacgtacaacgacggagcatggcattacatctctatcatgaaaatgggtgttaagtt gatgattaacatagatgacagagaattaataactaaaccaggtagcagctctgcttatttattaaccgagcgggaacttt accttggcggtactgatttcacagtagaggaggatcttgtaggatcatcggaccgatttgtaggctgtgtctccgatgtc actgttaatggaaagtttaagaactttgccagtatagtaagcaggaatgtgaaggatgtatcattctctgaatgtccagt agaagatcctgatacacccacgcctactgaagctccaatcatcgacactacaggtcctgaggatggtatacagtttggtc tcactcagactagtagatatgaatatcctacattaggagcctctctcagagtcaaatttttgatgtctatggaaataaaa acaacttccagttcaggagtgatattttatgcagctgatggtaaacataaggatttcactgcccttatactgatagatgg tcatattatgttcaaatttgactgtggtactggtgcagctgtactaaagagtcctaaaacatacaatgatggccaatggc acaagattgattttggccgtaatactaagtctggtacaatgaatatcgatggggaggaagtagcctctggtgaatctata ggagtcacacgatcgttaaacgtcgttccaccattgttcctcggcggactttccattgatgtattgaataatgacagagc caaaaataagaacctgaatgtaaataagaattatggggtaggcttagatctgtcaatcagaatgagtatccgtccacgta acaacaccggggtgttattctctatccatgctggtgacatggacttcctactcctacagatggtgaatggcaggatatta ctaagtgctgacaatggtggaggtgcctttgacacgacctatgaccctggatttgacactgcactgtgtgatggacaatg gcatgagatagaggctattaaagctaaggagatcctgatattacgtgtagatggtgttaactctacccctggacagggaa caaggggatcctccgagattaactctaaccatccactctatattggtggagtgccagatttccagcgtagaggaatgcta gctaacagaaacttcaatggttgtataagggatgtagcattgaagagaggcaaagagccggcctttagacctcagtatgt gatgtcagaccagattacaggagacgttaccattaacaagtgtccagtcaactag |
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Protein
| Protein ID | pfu_aug2.0_3458.1_29108.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3458.1_29108.t1 MGSSCQSCAEGYYRSTRSPYLGACVPCECYGHSNKCDSETGQCLNCTDNTMGRHCELCLPGHYGDATTGVCQICSCPLPI PGNNFASRCDVISGQVISCDCQEGYTGQLCDRCSPGYYGDPRTVGEICRPCQCSGNIDTRDPYACDLATGECLRCLNNTT GPNCAYCQEWFHGDAVNAKDCRSCDCDQCGSSSCDRDSGTCTCKPNVVGPTCSQCAPDTYGFSGCNGCRDCNCGAASVQS QCDDNGQCTCQPGVTGRACDMCIEGYWNYGPSGCQECQCEDDGAITCNNVTGRCQCLPGVVGDRCDRCAPRWVLVPNRGC QECDSCVHILLDDVEVLERNISRLSINLESVSIGVTAFKRLEDINNTVYELRPHVDDLLSGAQDIALGPLQEAVRELQTE ADDGKFKSESVAGDGENTVNVARTLFNEAYNTDALANDTNAQALAAVQQAKDVLENVEKGIQVTNIETYITQSEMILNEI LTSVLLMLTTGQKGNMNSHLNYCILLAKLRILIRTPENQMNKSRAIMKSLADIQRRLYDLQQETRHSTNDADDADYIIER LKTTALNLLKAKLGSIDMTNTDINMVLDMSRKLLDDALEFLRITNATRDEVEAKASSMDQALKALRNFVGNITNGIQDAE KMLNESQVHAKNLKDQADFLENVYTDTRDTAANALKAAQAYQNIVDAIIDAYNASTSANSAADQALAKSNGVGNRTKESK ETSSSLLDAARDRYGKTKQAQVSARANAAANKADRANQRALDARAQVAPVLSKLPQDRQKIERLANAVAQTNRDVYDATN QNNYVKDSLPKIRQLIDLIGEKASSVDTLKNNLLTNLTRLREQITIAREAANRIRVGMEFLGNTTVQLRNPENVDQAGSY TTLSMYIQTRQQNAMLAYVGAEMIDGRPTSPIRVGMEFLGNTTVQLRNPENVDQAGSYTTLSMYIQTRQQNAMLAYVGAE MIDGRPTSPDHMALELRNGRPVFLFDLGSGQVAIPSTRDVSDGQWYKITAQRIGKVGTLTVEGDPEKGIPKDIVSGESGG TYTVLELNPVTTRFYMGGTPSDFRLPAGVTSIFYEGIMEQVEFDDKPMGLWNFVYGENNYLGATERDVMKTVVSNGFRFN GKGYVILSARRLNVNSKESDIILDFKTYAEDGLILFMGKGRDFTSIEIRKGKILFQYDLGGMPAKLMSNKTYNDGKWHKI QAQRQEKRGGLTIDGTLVTTGESPGTMTDMSFEDDVFIGGYNQLIVNVNGVNSRGFDGCIRNVQFGTNIYDLNINKGAKG VVRGCPEQILRTASFSANRNGYIKLPLDSIGENFDMTFRLKTKSDSSLIAYTSSNNQNSGFSVSTNDGKIIIISDSGNDP VVLESTVNTYNDGAWHYISIMKMGVKLMINIDDRELITKPGSSSAYLLTERELYLGGTDFTVEEDLVGSSDRFVGCVSDV TVNGKFKNFASIVSRNVKDVSFSECPVEDPDTPTPTEAPIIDTTGPEDGIQFGLTQTSRYEYPTLGASLRVKFLMSMEIK TTSSSGVIFYAADGKHKDFTALILIDGHIMFKFDCGTGAAVLKSPKTYNDGQWHKIDFGRNTKSGTMNIDGEEVASGESI GVTRSLNVVPPLFLGGLSIDVLNNDRAKNKNLNVNKNYGVGLDLSIRMSIRPRNNTGVLFSIHAGDMDFLLLQMVNGRIL LSADNGGGAFDTTYDPGFDTALCDGQWHEIEAIKAKEILILRVDGVNSTPGQGTRGSSEINSNHPLYIGGVPDFQRRGML ANRNFNGCIRDVALKRGKEPAFRPQYVMSDQITGDVTINKCPVN |
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