Gene
| Gene Model ID | pfu_aug2.0_348.1_27261 |
|---|---|
| Locus | scaffold348.1 : 51821 ... 55975 : - |
| To GenomeBrowser | scaffold348.1:51821..55975 |
| Genes list of scaffold | scaffold348.1 |
| Synonym | pfu_aug1.0_15919.1_03657 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_348.1_27261.t1 | 1 | 1 | JmjN | 17 | 50 | 3.1e-16 | 58.5 | 7.3e-20 | 5.4e-16 | 57.8 |
| pfu_aug2.0_348.1_27261.t1 | 1 | 1 | ARID | 81 | 166 | 2.7e-23 | 81.6 | 5.8e-27 | 4.3e-23 | 80.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_348.1_27261.t1 | gi|12842081|dbj|BAB25462.1| | unnamed protein product [Mus musculus] | 0.0 |
| pfu_aug2.0_348.1_27261.t1 | gi|74187881|dbj|BAE24562.1| | unnamed protein product [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_348.1_27261.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_348.1_27261.t1 atggccatggatgacgtgtaccataatttcattcctcctcctgaggcaccggttttcactccgactgaggaggagttctc ggacccactgggctacattgcaaagatcaagcctattgccgaaaagactggaatttgcaaaatcaaaccaccttcggatt ggcaacctccattcgctgtagatgtagaaaaatttcggtttacacctagagtacaaaggctcaatgaattggaggcattt actcgaatgaaattgaattttctggataagcttgctagattctgggaactacaaggttgttcgttgaaaattcctcatgt tgaaaggaaactattggatttatacaacttgtacaaggctgtggaagatgaaggtggaatggaaactgtatcgagggaga gaaggtggtccaaagtagctcagcggctcaaatatccagccggtaaaggcattggtgccaaccttaaaatacactatgag agacttctgtacccattctatatatttgagagaagagagatcttcatgccacaagagaaacccaagcctctgagtaaccc tgaggaagacgataagggagataaggattataaaccacacggtattgcagctaaaacggcagccgggggttacaacagga aaaacaaacgagagcgcactgtcaaagatgaggtaaaacttctatcagaagcttgtaactggacttttatttactag |
|
Protein
| Protein ID | pfu_aug2.0_348.1_27261.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_348.1_27261.t1 MAMDDVYHNFIPPPEAPVFTPTEEEFSDPLGYIAKIKPIAEKTGICKIKPPSDWQPPFAVDVEKFRFTPRVQRLNELEAF TRMKLNFLDKLARFWELQGCSLKIPHVERKLLDLYNLYKAVEDEGGMETVSRERRWSKVAQRLKYPAGKGIGANLKIHYE RLLYPFYIFERREIFMPQEKPKPLSNPEEDDKGDKDYKPHGIAAKTAAGGYNRKNKRERTVKDEVKLLSEACNWTFIY |
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