Gene
| Gene Model ID | pfu_aug2.0_348.1_27268 |
|---|---|
| Locus | scaffold348.1 : 189314 ... 203586 : + |
| To GenomeBrowser | scaffold348.1:189314..203586 |
| Genes list of scaffold | scaffold348.1 |
| Synonym | pfu_aug1.0_38408.1_41073 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_348.1_27268.t1 | 4 | 1 | zf-CCCH | 18 | 37 | 1.7e-17 | 62.6 | 2.2e-05 | 0.03 | 14.0 |
| pfu_aug2.0_348.1_27268.t1 | 2 | 1 | zf-rbx1 | 23 | 54 | 3.4e-06 | 27.0 | 0.87 | 1200.0 | -0.3 |
| pfu_aug2.0_348.1_27268.t1 | 4 | 2 | zf-CCCH | 46 | 65 | 1.7e-17 | 62.6 | 4.5e-09 | 6.1e-06 | 25.7 |
| pfu_aug2.0_348.1_27268.t1 | 4 | 3 | zf-CCCH | 172 | 195 | 1.7e-17 | 62.6 | 3.8e-11 | 5.2e-08 | 32.3 |
| pfu_aug2.0_348.1_27268.t1 | 2 | 2 | zf-rbx1 | 236 | 297 | 3.4e-06 | 27.0 | 2.5e-09 | 3.4e-06 | 27.0 |
| pfu_aug2.0_348.1_27268.t1 | 1 | 1 | zf-RING_2 | 243 | 297 | 2.5e-08 | 33.6 | 1.9e-11 | 2.5e-08 | 33.6 |
| pfu_aug2.0_348.1_27268.t1 | 1 | 1 | zf-C3HC4 | 243 | 296 | 8.2e-08 | 31.7 | 3.4e-10 | 4.6e-07 | 29.3 |
| pfu_aug2.0_348.1_27268.t1 | 4 | 4 | zf-CCCH | 332 | 352 | 1.7e-17 | 62.6 | 0.0043 | 5.8 | 6.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_348.1_27268.t1 | gi|676486932|ref|XP_009064135.1| | hypothetical protein LOTGIDRAFT_221472 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_348.1_27268.t1 | gi|632961351|ref|XP_007896709.1| | PREDICTED: E3 ubiquitin-protein ligase makorin-1 isoform X2 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_348.1_27268.t1 | gi|632961349|ref|XP_007896708.1| | PREDICTED: E3 ubiquitin-protein ligase makorin-1 isoform X1 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_348.1_27268.t1 | gi|543369523|ref|XP_005527988.1| | PREDICTED: E3 ubiquitin-protein ligase makorin-1 isoform X2 [Pseudopodoces humilis] | 0.0 |
| pfu_aug2.0_348.1_27268.t1 | gi|729736950|ref|XP_010564568.1| | PREDICTED: E3 ubiquitin-protein ligase makorin-1 isoform X2 [Haliaeetus leucocephalus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_348.1_27268.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_348.1_27268.t1 atggcagaaggaggatctgaatcccctactacatggtcgtcaaagatacaatgcaggtattacctacatggagtgtgcag agagggtgcaaattgtcgttataatcatgataaatcagccaaaccatccatggtgtgtcggtactacttagctggaagct gctcttacgggccatcgtgcaggtatgaccatgtcaaaccaaagtcctcaccctccaaacaggataaccaccctgatcct ctgatctcatcaaagtccagactaccacctcctctaatggatccagggaagatcagaggtaaccttatcacactgaagaa aggaggcaccaccctgacaagtcctcagtccccatgtcctcgatccccagaggactgggttaaagccaatgaatttgtac ccggtcaaccttacacatgctcaacaatcccagcatcctatgccagagctgccaacttggaatcgcaatcagatatcaat gtcctaccctctgatgaccttctgacccttgacggtaaaccattatgtccatatctagccaaaggagagtgtccgtatgg agaagattgtaaatatatacacggtgatatttgtgacctttgtgggttagcggtactcagtcccgacaatgagcaacaga gggaaaaacacattaaggaatgtatggaggaacatgagcgtgacatggaattgtcgtttgcaatagcgcggagtaaagac aaggcgtgtggtatatgtatggacacgataatggaaaagaacccgcccaccgagaggagatttggaatcctgtctcactg tagtcacatcttctgtttgtcttgtataaggaaatggagaggtgcaaaacagtttgaaaacaaaattgttaaggcatgcc cagaatgtcgtgtgaactcaaactttgttactccaagcaagtactgggtggaatcggaggaagacaaacaaaaactcatc aatagttataaaacagcattaagtaacaagcactgcaagtatttcaaacgtggtaatggagagtgcccttttaataacaa ctgcttctatctacatgccaaccctgatggctctaaagcttacgccaagcctacggttcggcgtcgcagacaaaacgctg atggtgatttggactttatgggacactttaacttgtgggatttccttgaagaaagagaaagcgaacgtagtctcttacta atggagttagaagccaatcttgagagtctcttatttgatctaatgctaggttacgacagtgatagtgacttggatgattt ttga |
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Protein
| Protein ID | pfu_aug2.0_348.1_27268.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_348.1_27268.t1 MAEGGSESPTTWSSKIQCRYYLHGVCREGANCRYNHDKSAKPSMVCRYYLAGSCSYGPSCRYDHVKPKSSPSKQDNHPDP LISSKSRLPPPLMDPGKIRGNLITLKKGGTTLTSPQSPCPRSPEDWVKANEFVPGQPYTCSTIPASYARAANLESQSDIN VLPSDDLLTLDGKPLCPYLAKGECPYGEDCKYIHGDICDLCGLAVLSPDNEQQREKHIKECMEEHERDMELSFAIARSKD KACGICMDTIMEKNPPTERRFGILSHCSHIFCLSCIRKWRGAKQFENKIVKACPECRVNSNFVTPSKYWVESEEDKQKLI NSYKTALSNKHCKYFKRGNGECPFNNNCFYLHANPDGSKAYAKPTVRRRRQNADGDLDFMGHFNLWDFLEERESERSLLL MELEANLESLLFDLMLGYDSDSDLDDF |
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