Gene
| Gene Model ID | pfu_aug2.0_3480.1_02414 |
|---|---|
| Locus | scaffold3480.1 : 10886 ... 36585 : + |
| To GenomeBrowser | scaffold3480.1:10886..36585 |
| Genes list of scaffold | scaffold3480.1 |
| Synonym | pfu_aug1.0_1643.1_58611 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| netrin 1b isoform x1 | GO:0001569 GO:0005576 GO:0016358 GO:0016525 GO:0021960 GO:0030516 GO:0033564 GO:0048665 GO:0048846 GO:0071678 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3480.1_02414.t1 | 5 | 1 | Laminin_EGF | 33 | 45 | 1.1e-25 | 89.2 | 0.87 | 6400.0 | -2.9 |
| pfu_aug2.0_3480.1_02414.t1 | 3 | 1 | Laminin_N | 43 | 275 | 0.0 | 225.8 | 0.0 | 0.0 | 225.8 |
| pfu_aug2.0_3480.1_02414.t1 | 5 | 2 | Laminin_EGF | 82 | 91 | 1.1e-25 | 89.2 | 1.6 | 12000.0 | -3.7 |
| pfu_aug2.0_3480.1_02414.t1 | 5 | 3 | Laminin_EGF | 277 | 323 | 1.1e-25 | 89.2 | 1.1e-11 | 7.9e-08 | 32.1 |
| pfu_aug2.0_3480.1_02414.t1 | 3 | 2 | Laminin_N | 284 | 311 | 0.0 | 225.8 | 1.6 | 12000.0 | -5.1 |
| pfu_aug2.0_3480.1_02414.t1 | 5 | 4 | Laminin_EGF | 333 | 393 | 1.1e-25 | 89.2 | 7.2e-12 | 5.4e-08 | 32.6 |
| pfu_aug2.0_3480.1_02414.t1 | 3 | 3 | Laminin_N | 359 | 380 | 0.0 | 225.8 | 0.41 | 3100.0 | -3.1 |
| pfu_aug2.0_3480.1_02414.t1 | 5 | 5 | Laminin_EGF | 396 | 438 | 1.1e-25 | 89.2 | 4.7e-15 | 3.5e-11 | 42.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3480.1_02414.t1 | gi|676445237|ref|XP_009050689.1| | hypothetical protein LOTGIDRAFT_201560 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3480.1_02414.t1 | gi|199428310|emb|CAP71949.2| | ntn1b [Danio rerio] | 0.0 |
| pfu_aug2.0_3480.1_02414.t1 | gi|190337452|gb|AAI63393.1| | Ntn1b protein [Danio rerio] | 0.0 |
| pfu_aug2.0_3480.1_02414.t1 | gi|528473756|ref|XP_005171608.1| | PREDICTED: netrin 1b isoform X1 [Danio rerio] | 0.0 |
| pfu_aug2.0_3480.1_02414.t1 | gi|18859143|ref|NP_571073.1| | netrin 1b precursor [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3480.1_02414.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3480.1_02414.t1 atgtaccttttctcggtatgtatgggatgtttagtccttgagagtttttcagcttccttcaacatgttttcagtccaaga agttccaccagacccatgttatgacgaaggaggggaacctaaacagtgtattccggatttcgtcaacgctgctttcggaa aggaagtgatttcatctagcacgtgcggctccccgccaagtagattttgtaagtctacgatagacaaggacaatcgtgtc atcagaaattgttttatttgtgatgctcagcaccctcaaagacagcatccaacgtcttatctcacagatttaaataatcc taacgatttaacgtgctggatgtctaatacgtacgtacagtatccacaaaatgtgacgttaaaattagctttaaacaaga aatacgagttgacatacattagtttgcaattttgttcttcaagacccgattccatggctatattcaaaagtatagattac ggaaaaacgtggataccattccaatattactctaaccattgcaagaaaatgtatggtaaatcacctagagcgattgttac caaagccaacgagcaggaggccctgtgtacggaatcctacagtaatatagagcctctgactggagccagggtggccttta gcaccctagagggccgaccatcagcttatgatttcgagaatagtccgattctacaagactggataacggctacagacatc atggtggtcttcaacaaactgaacacgtacaatgacgaaaacacggatgacgacggagcaagggaaagttactactactc actatccgatttcgctgtcggtggccgttgtaagtgtaacggccacgcatccaaatgttctgtaaatcgggagggacagt tcgtatgtgagtgcaagcacaatacagccggtaacgactgcgaaaaatgtaaaccattccatttcgaccgtccatgggct cgggcaacatcagctgatgccaacgcgtgtgtggcttgcaattgtaaccttcatgccagacaatgccgcttcaatatgga gttgtaccgactttccgggaacaaatcgggaggagtgtgtataaagtgtcgtcataacactgccggccggaactgccatt actgccgggaaggctactacagggactcctccaaacaaataacccacagaaaagcttgtaaagcatgtggctgccatcca gtaggagcacttggaaagacgtgtaaccagaccaccggacagtgtccgtgcaaggacggagtgaccggtctgacgtgtaa tagatgtgctaaaggctatatacagagcaagtcccccattgcaccttgcataagtgagtaa |
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Protein
| Protein ID | pfu_aug2.0_3480.1_02414.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3480.1_02414.t1 MYLFSVCMGCLVLESFSASFNMFSVQEVPPDPCYDEGGEPKQCIPDFVNAAFGKEVISSSTCGSPPSRFCKSTIDKDNRV IRNCFICDAQHPQRQHPTSYLTDLNNPNDLTCWMSNTYVQYPQNVTLKLALNKKYELTYISLQFCSSRPDSMAIFKSIDY GKTWIPFQYYSNHCKKMYGKSPRAIVTKANEQEALCTESYSNIEPLTGARVAFSTLEGRPSAYDFENSPILQDWITATDI MVVFNKLNTYNDENTDDDGARESYYYSLSDFAVGGRCKCNGHASKCSVNREGQFVCECKHNTAGNDCEKCKPFHFDRPWA RATSADANACVACNCNLHARQCRFNMELYRLSGNKSGGVCIKCRHNTAGRNCHYCREGYYRDSSKQITHRKACKACGCHP VGALGKTCNQTTGQCPCKDGVTGLTCNRCAKGYIQSKSPIAPCISE |
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