Gene
| Gene Model ID | pfu_aug2.0_3490.1_02416 |
|---|---|
| Locus | scaffold3490.1 : 1 ... 26215 : - |
| To GenomeBrowser | scaffold3490.1:1..26215 |
| Genes list of scaffold | scaffold3490.1 |
| Synonym | pfu_aug1.0_9992.1_60716 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3490.1_02416.t1 | 2 | 1 | Rab3-GTPase_cat | 328 | 357 | 1.2e-09 | 37.7 | 0.2 | 3000.0 | -2.6 |
| pfu_aug2.0_3490.1_02416.t1 | 2 | 2 | Rab3-GTPase_cat | 449 | 496 | 1.2e-09 | 37.7 | 2.4e-13 | 3.5e-09 | 36.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3490.1_02416.t1 | gi|617645915|ref|XP_007532762.1| | PREDICTED: rab3 GTPase-activating protein catalytic subunit [Erinaceus europaeus] | 0.0 |
| pfu_aug2.0_3490.1_02416.t1 | gi|676425404|ref|XP_009044334.1| | hypothetical protein LOTGIDRAFT_211630 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3490.1_02416.t1 | gi|524874307|ref|XP_005093890.1| | PREDICTED: rab3 GTPase-activating protein catalytic subunit-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_3490.1_02416.t1 | gi|585641318|ref|XP_006880869.1| | PREDICTED: rab3 GTPase-activating protein catalytic subunit [Elephantulus edwardii] | 0.0 |
| pfu_aug2.0_3490.1_02416.t1 | gi|585660554|ref|XP_006816405.1| | PREDICTED: rab3 GTPase-activating protein catalytic subunit-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3490.1_02416.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3490.1_02416.t1 atggatgctgatgtgtttgaaatcacagactttaccacagctactgactgggagagatttattgctcgactggaggaagt gctccatgaatggaatctaatcaaccacacccctctcccaccctctccgaagggagagctgtcctcagacaagtggaagg aaaaaacagatactgtcaattttgccaattttatgtttgatataacctataaatacctgaatcgggatgacattgatctc catagcaacgatcaaaggtcaagtcctgaggaggaagacgatggagatagtgaggatcagttaccaacggtgatggctga cctgatgagtttggataacgactttccggctaaagctcactgtttgtgcagatgtgccgtgcccatctttgtacaagtac agcagttttggagacagatgtttacgggtacatgtgtgctttctggatccgccattgactttgatgtgatccatctgaag agtattccatctccatacaatcacctagctggtctactggatgtgtttaaagcaaaaatagcaactcatgttgttcctcg acctacagttaccgttgctgtcaggtttacatacatactgacagactgggttaactccccctggccacaagaacctcctg gacgtcatagatatgttacgatgtcacagttagaaatagcgtcagtagttgtcatgttgggtcttggtgtgagtaaatac ctatcctcccctatggaagatgaaataggatgttccagctttaagtctttaccatttggggcatgtgaagatcctgtaag tgagctgcagttagcttgtacctggccgagtctctctgaggatatgatcgtagaaaatcagaattatagtgttgagggag gtgcgcctaacttaggagcctgccttttgtatcagaaattacagatgttgaattgctgtatagagagaaaaataaaacgg gaacagatttacaaagggtacacaggagaatccttggaaacacctgacagtgattctggttgcctagcaactgataaaca gttagccaatcacaataaaatgtccaaaagtgatagcttgactacttctttttcaaaggaaaacttaaagtgcaatagtg ataattcagaacagcaaaaccgggatgcaaaacataactgtgattctctgacagaggaacttccagctaaaattgttcac ctggatagttcaagtgaagatgaggaattttttgagtgtgatgaggagagtatggatgaagattctagtagatcaaataa caaacagctcacacatatagacagtgttgatacgacgtcaagttccgaagctccgttccacgatagcgttacgcataaac ctgaggggcggcagtgtcgtcatggtgatcttctcctcctacatgtggacgagccgttatatatacccctgactcaggaa ccgtcacccatgacagaagatatgctggaggaacatgcagaggttctagctaa |
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Protein
| Protein ID | pfu_aug2.0_3490.1_02416.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3490.1_02416.t1 MDADVFEITDFTTATDWERFIARLEEVLHEWNLINHTPLPPSPKGELSSDKWKEKTDTVNFANFMFDITYKYLNRDDIDL HSNDQRSSPEEEDDGDSEDQLPTVMADLMSLDNDFPAKAHCLCRCAVPIFVQVQQFWRQMFTGTCVLSGSAIDFDVIHLK SIPSPYNHLAGLLDVFKAKIATHVVPRPTVTVAVRFTYILTDWVNSPWPQEPPGRHRYVTMSQLEIASVVVMLGLGVSKY LSSPMEDEIGCSSFKSLPFGACEDPVSELQLACTWPSLSEDMIVENQNYSVEGGAPNLGACLLYQKLQMLNCCIERKIKR EQIYKGYTGESLETPDSDSGCLATDKQLANHNKMSKSDSLTTSFSKENLKCNSDNSEQQNRDAKHNCDSLTEELPAKIVH LDSSSEDEEFFECDEESMDEDSSRSNNKQLTHIDSVDTTSSSEAPFHDSVTHKPEGRQCRHGDLLLLHVDEPLYIPLTQE PSPMTEDMLEEHAEVLA |
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