Gene
| Gene Model ID | pfu_aug2.0_3490.1_02417 |
|---|---|
| Locus | scaffold3490.1 : 31237 ... 35495 : - |
| To GenomeBrowser | scaffold3490.1:31237..35495 |
| Genes list of scaffold | scaffold3490.1 |
| Synonym | pfu_aug1.0_88198.1_56745 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| toll-like receptor 13 | GO:0002376 GO:0050896 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3490.1_02417.t1 | 13 | 1 | LRR_1 | 72 | 89 | 4.4e-09 | 35.1 | 5.9 | 8000.0 | -2.3 |
| pfu_aug2.0_3490.1_02417.t1 | 7 | 1 | LRR_8 | 72 | 132 | 2.3e-35 | 120.1 | 1.4e-07 | 0.00019 | 21.1 |
| pfu_aug2.0_3490.1_02417.t1 | 4 | 1 | LRR_5 | 96 | 210 | 2.2e-13 | 50.0 | 9.1e-05 | 0.12 | 12.0 |
| pfu_aug2.0_3490.1_02417.t1 | 10 | 1 | LRR_4 | 99 | 132 | 1.5e-19 | 69.1 | 0.00095 | 1.3 | 8.7 |
| pfu_aug2.0_3490.1_02417.t1 | 10 | 2 | LRR_4 | 121 | 154 | 1.5e-19 | 69.1 | 0.0036 | 4.9 | 6.8 |
| pfu_aug2.0_3490.1_02417.t1 | 13 | 2 | LRR_1 | 122 | 146 | 4.4e-09 | 35.1 | 0.17 | 230.0 | 2.4 |
| pfu_aug2.0_3490.1_02417.t1 | 4 | 2 | LRR_5 | 169 | 234 | 2.2e-13 | 50.0 | 0.004 | 5.4 | 6.7 |
| pfu_aug2.0_3490.1_02417.t1 | 7 | 2 | LRR_8 | 178 | 235 | 2.3e-35 | 120.1 | 2.5e-13 | 3.4e-10 | 39.5 |
| pfu_aug2.0_3490.1_02417.t1 | 13 | 3 | LRR_1 | 179 | 200 | 4.4e-09 | 35.1 | 0.0031 | 4.2 | 7.7 |
| pfu_aug2.0_3490.1_02417.t1 | 10 | 3 | LRR_4 | 180 | 217 | 1.5e-19 | 69.1 | 1.6e-11 | 2.1e-08 | 33.5 |
| pfu_aug2.0_3490.1_02417.t1 | 13 | 4 | LRR_1 | 202 | 218 | 4.4e-09 | 35.1 | 0.0011 | 1.5 | 9.1 |
| pfu_aug2.0_3490.1_02417.t1 | 13 | 5 | LRR_1 | 226 | 245 | 4.4e-09 | 35.1 | 0.49 | 650.0 | 1.1 |
| pfu_aug2.0_3490.1_02417.t1 | 10 | 4 | LRR_4 | 226 | 240 | 1.5e-19 | 69.1 | 0.076 | 100.0 | 2.6 |
| pfu_aug2.0_3490.1_02417.t1 | 10 | 5 | LRR_4 | 246 | 269 | 1.5e-19 | 69.1 | 0.0027 | 3.6 | 7.3 |
| pfu_aug2.0_3490.1_02417.t1 | 13 | 6 | LRR_1 | 247 | 267 | 4.4e-09 | 35.1 | 0.0053 | 7.2 | 7.0 |
| pfu_aug2.0_3490.1_02417.t1 | 7 | 3 | LRR_8 | 247 | 310 | 2.3e-35 | 120.1 | 2.4e-09 | 3.2e-06 | 26.8 |
| pfu_aug2.0_3490.1_02417.t1 | 7 | 4 | LRR_8 | 274 | 330 | 2.3e-35 | 120.1 | 2.0e-11 | 2.7e-08 | 33.4 |
| pfu_aug2.0_3490.1_02417.t1 | 10 | 6 | LRR_4 | 274 | 313 | 1.5e-19 | 69.1 | 2.6e-06 | 0.0035 | 16.9 |
| pfu_aug2.0_3490.1_02417.t1 | 4 | 3 | LRR_5 | 276 | 362 | 2.2e-13 | 50.0 | 9.5e-08 | 0.00013 | 21.6 |
| pfu_aug2.0_3490.1_02417.t1 | 13 | 7 | LRR_1 | 276 | 295 | 4.4e-09 | 35.1 | 0.012 | 16.0 | 5.9 |
| pfu_aug2.0_3490.1_02417.t1 | 13 | 8 | LRR_1 | 299 | 321 | 4.4e-09 | 35.1 | 0.00069 | 0.93 | 9.7 |
| pfu_aug2.0_3490.1_02417.t1 | 7 | 5 | LRR_8 | 308 | 357 | 2.3e-35 | 120.1 | 2.4e-05 | 0.032 | 13.9 |
| pfu_aug2.0_3490.1_02417.t1 | 7 | 6 | LRR_8 | 365 | 411 | 2.3e-35 | 120.1 | 1.0e-06 | 0.0014 | 18.3 |
| pfu_aug2.0_3490.1_02417.t1 | 10 | 7 | LRR_4 | 371 | 389 | 1.5e-19 | 69.1 | 0.00012 | 0.17 | 11.5 |
| pfu_aug2.0_3490.1_02417.t1 | 10 | 8 | LRR_4 | 376 | 412 | 1.5e-19 | 69.1 | 4.9e-05 | 0.066 | 12.8 |
| pfu_aug2.0_3490.1_02417.t1 | 13 | 9 | LRR_1 | 377 | 393 | 4.4e-09 | 35.1 | 0.031 | 41.0 | 4.7 |
| pfu_aug2.0_3490.1_02417.t1 | 4 | 4 | LRR_5 | 397 | 481 | 2.2e-13 | 50.0 | 3.3e-05 | 0.044 | 13.4 |
| pfu_aug2.0_3490.1_02417.t1 | 13 | 10 | LRR_1 | 404 | 416 | 4.4e-09 | 35.1 | 3.7 | 4900.0 | -1.6 |
| pfu_aug2.0_3490.1_02417.t1 | 7 | 7 | LRR_8 | 404 | 463 | 2.3e-35 | 120.1 | 1.2e-09 | 1.7e-06 | 27.6 |
| pfu_aug2.0_3490.1_02417.t1 | 10 | 9 | LRR_4 | 404 | 443 | 1.5e-19 | 69.1 | 6.2e-05 | 0.083 | 12.5 |
| pfu_aug2.0_3490.1_02417.t1 | 10 | 10 | LRR_4 | 427 | 485 | 1.5e-19 | 69.1 | 0.00044 | 0.59 | 9.8 |
| pfu_aug2.0_3490.1_02417.t1 | 13 | 11 | LRR_1 | 428 | 447 | 4.4e-09 | 35.1 | 0.0024 | 3.3 | 8.1 |
| pfu_aug2.0_3490.1_02417.t1 | 13 | 12 | LRR_1 | 455 | 471 | 4.4e-09 | 35.1 | 1.8 | 2400.0 | -0.7 |
| pfu_aug2.0_3490.1_02417.t1 | 13 | 13 | LRR_1 | 479 | 487 | 4.4e-09 | 35.1 | 5.8 | 7900.0 | -2.2 |
| pfu_aug2.0_3490.1_02417.t1 | 1 | 1 | TIR_2 | 603 | 708 | 2.2e-11 | 43.8 | 3.6e-14 | 4.9e-11 | 42.6 |
| pfu_aug2.0_3490.1_02417.t1 | 1 | 1 | TIR | 603 | 734 | 1.3e-25 | 89.4 | 1.8e-28 | 2.4e-25 | 88.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3490.1_02417.t1 | gi|676440631|ref|XP_009049239.1| | hypothetical protein LOTGIDRAFT_158275 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3490.1_02417.t1 | gi|658909194|ref|XP_008394681.1| | PREDICTED: toll-like receptor 13 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_3490.1_02417.t1 | gi|617412156|ref|XP_007555779.1| | PREDICTED: toll-like receptor 13 [Poecilia formosa] | 0.0 |
| pfu_aug2.0_3490.1_02417.t1 | gi|740529803|ref|NP_001290325.1| | toll-like receptor 13 precursor [Larimichthys crocea] | 0.0 |
| pfu_aug2.0_3490.1_02417.t1 | gi|551522262|ref|XP_005812620.1| | PREDICTED: uncharacterized protein LOC102222731 [Xiphophorus maculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3490.1_02417.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3490.1_02417.t1 atgctgctaggtactggaaatacaggaaaaggaagaaacatgtatatattcatcatcctagcctttaacatctatgtcat taccatacaagcaattcaaagtaacataaaatcgttgccatggaaacgattttgcgacattattggtctagaggccaagt gttcaggacatgggaagaatatgacacaaattccacagttgcctccatttgtacaaaaactaattttagacaatgataat tttcgtaagatcacttcagaaacgttcaatccaatcatcagaagcaaaatgaacgtaactaaactttcattcaaaaattc agtagttcattttatcggtgcgcatgctttcaagaatatccccagtctacattctctgaatttggcctccaataggaaat tgaaccttacgtctctgaagaattcgttttcgagtttacaaggtcagaatatttcctatcttggcttcagtgaaatggca tggacatacgatagcttatccgttggtatttttgagaatctatcttccagaaacattgatcgtttggtcctgagaagcaa taaaatttcacgcatacctaattcgtcacttgaaggacttcagaagttgaaaatattggatttgtcttcaaaccagatca aggattgcgaagttgagttttcaagactctacggtttagaggacttgaatctcgaacgaaatgaagtcaaatcttgtaat gtagttaacttacctaaaaatctgaaaattttacgactaggaagtaatcgtttgcttgatgtgccattattttgttcatt aacaaacgatccatcaataccatatttagaagaattggtattgagtgacaatttgatatcaatactgacagagtcttcgt tcgaatgcatccagagcctgactcatcttgacttgtccatgaatgagattcgacattttagaccgcgagttttccttaat ctgttaaacttggaagatttgaaactaagaaaaatgaagcaaagtgtcatacgtattgatgatggtgcattttctatgcc atccgtaaggaagttctatttcgaccaaaatttctatgaattcgacacaataaagcgagcaagacgtgcttccttgagca actgcacgaaattagaacttcttgatttatctaagaattatatgccaaaatttcctcctgcagttaggtatgttctgaac ggcttgatcaatctgaagaagctatatctcgaacgtgtttactggaacgaagttccaaaagatttattcaaaatgatgcc taatattgaagaagttgatctttcatcaaacggaataacgaatctcagcagaggtcatttcttgaacgaatcaaaaatag tccgaatgaagctgcacaacaatcggattgcgcatgtgcgttccgatacatttccggatgtgttctggaaatcaatcaaa attattgacttatcagctaatccgtatgcctgtgattgtgatctactttggttcagggatttattacggaaatccaaaga ccaaaagatcacatttaagcgatatccgctggattacaaatgcttgattccacaaacactgaagggcgtcaggctggcaa atttcaatatgacggcagaagagtgtcagaaaaaatctgaattcgtagtcgccattgctacttccggttcagtcattgca tttggaattatggtgatagtaattgcttatagttgccgttggcacatcagatattggatttaccttttaaggtatcaaaa gaaagattacaatattcttttatctgaaagattcaagtacgatggattcatcatatactcagaaaacgactgtgatttcg tacataatactctacttgcaaaactggagaacgagttaggataccaaatgtgcgttcattatcgagatttcgaggttggc aaaatgatagttgacaacatcgtggaatgcatgtcccagagtcgacatgctcttgtggtgatatctaagacgttctgtca aagcaaatggtgcaagtttgaaatgttactagctcaagaccgatggcttcgtaacgaaagtggagcattgattatagtta tgttggaagaagtgaacagtcggtacatgacaaaggacctgcgagcgcttattcagacaacaacttattgctcatggaca gaaaatgaagtcggacaagtactgttttgggaacaactttttagttctttcaaaaaatattaa |
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Protein
| Protein ID | pfu_aug2.0_3490.1_02417.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3490.1_02417.t1 MLLGTGNTGKGRNMYIFIILAFNIYVITIQAIQSNIKSLPWKRFCDIIGLEAKCSGHGKNMTQIPQLPPFVQKLILDNDN FRKITSETFNPIIRSKMNVTKLSFKNSVVHFIGAHAFKNIPSLHSLNLASNRKLNLTSLKNSFSSLQGQNISYLGFSEMA WTYDSLSVGIFENLSSRNIDRLVLRSNKISRIPNSSLEGLQKLKILDLSSNQIKDCEVEFSRLYGLEDLNLERNEVKSCN VVNLPKNLKILRLGSNRLLDVPLFCSLTNDPSIPYLEELVLSDNLISILTESSFECIQSLTHLDLSMNEIRHFRPRVFLN LLNLEDLKLRKMKQSVIRIDDGAFSMPSVRKFYFDQNFYEFDTIKRARRASLSNCTKLELLDLSKNYMPKFPPAVRYVLN GLINLKKLYLERVYWNEVPKDLFKMMPNIEEVDLSSNGITNLSRGHFLNESKIVRMKLHNNRIAHVRSDTFPDVFWKSIK IIDLSANPYACDCDLLWFRDLLRKSKDQKITFKRYPLDYKCLIPQTLKGVRLANFNMTAEECQKKSEFVVAIATSGSVIA FGIMVIVIAYSCRWHIRYWIYLLRYQKKDYNILLSERFKYDGFIIYSENDCDFVHNTLLAKLENELGYQMCVHYRDFEVG KMIVDNIVECMSQSRHALVVISKTFCQSKWCKFEMLLAQDRWLRNESGALIIVMLEEVNSRYMTKDLRALIQTTTYCSWT ENEVGQVLFWEQLFSSFKKY |
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