Gene
| Gene Model ID | pfu_aug2.0_35.1_16749 |
|---|---|
| Locus | scaffold35.1 : 145604 ... 167925 : - |
| To GenomeBrowser | scaffold35.1:145604..167925 |
| Genes list of scaffold | scaffold35.1 |
| Synonym | pfu_aug1.0_5320.1_09092 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_35.1_16749.t1 | 1 | 1 | Patched | 202 | 873 | 0.0 | 346.6 | 0.0 | 0.0 | 346.3 |
| pfu_aug2.0_35.1_16749.t1 | 2 | 1 | Sterol-sensing | 324 | 473 | 2.7e-39 | 134.0 | 1.29998e-41 | 4.9e-38 | 129.9 |
| pfu_aug2.0_35.1_16749.t1 | 2 | 2 | Sterol-sensing | 747 | 870 | 2.7e-39 | 134.0 | 0.00032 | 1.2 | 8.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_35.1_16749.t1 | gi|676487337|ref|XP_009064260.1| | hypothetical protein LOTGIDRAFT_130973, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_35.1_16749.t1 | gi|291239107|ref|XP_002739466.1| | PREDICTED: protein patched homolog 1-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_35.1_16749.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_35.1_16749.t1 atgtcagaaacaaaaacaaacggctatatgaacggatctccatcacatatgaatgggaagccaagtcagaacgggtacat gaacggtaaacctacacagaacggacacccgggatccccggtccctgggggtagcaaggacgcacccaaaccaaatatat tcaaacggttcagcgacaagataatatcaggactagagtttgcattttacaaattgggatgtttgataggtacccatccg tggaagaccatcttattagtagtgtttataaccgctctgttggtgattggcgtcatacgttttgaggagactaacgacaa tgacgccatctgggtacctgaggactccatcaatgtggcccataaagagtttgtggacgccaagttttcacagcctcagt tcgtctacctcatctttactggaggaaatgttttgtcggctacttatatacagtcgctgttccaggcctacaaaacaata tcagatctcggtaacttgacggcagtatgtgcaaagagtggatctaactgtcgggtgaacagtatcctggagttatggag ctatgatgagacaacaattaatgccttaaatgatgccactgtcaaaacagctgttaataccatcaccaccagtcctatgt actacaatgactttgatgctacaacagttctaggcgagatttccagagatggatctggggatatcgactctgctaaggct gctaagatgaccttctttctgcttggagaggacgcgtacaaggacaattctgagtcatggcagaaactagctatagatag atctctcactggatactcagggatatcaaacacatacgtatttgccactaggagtttttcagatgagggtggtaacgcta tctctgacgacatcaagttcctgagttccggctacatgttggttattgtatttatatggattatcctcagcaggtttaat ctccgcgaccaaaggattgccttaacaattactggtttattggttgttggttttggtctcggtatgtcctttggtctgtc ctctgccgcgggatggaagtacggaccattacactctattctaccgttccttcttttaggtattggtgtggatgaccttt ttgtcattcatggttcacttaacagcttatctcaccacgatcaccaaaagccggtcagtgaaataacgggaagaatgctg aaacatgcgggtgtgtccattctggttacctctgtaacagatgttatggcatttggtattggtgccacaactacattgcc agccttgaaatctttctgtgtgtttagctgtatcggaattgtgggactattttgctatgccgctacattctttgttgcct gtgttaccattgacctgaatcgtacacgacaggagcgggacggatgtttatgctgttacgtacacaaaaactatactcca aataaatgtagcgagagaaatctactagtcaccttcatgcagaagttttacgcaaagtttctactaaagcttcctgtaaa gattgtggtgacagttataacggcaggtttactgggactcaatatttgggggttcgtcaacttggagcagaactttaacc aggattggttcattccgacagattcctatgcatacgactatttacaggcacaggataaatatttccctgacaatggggct ttggctaatgtatactgcaagagcataacatacagttcaaagaagtcaaactttgaatctttgtacaccagtctgggttc aagtcaatatgtatctaatgggactgtagacagttggtacaagtcatacactgaatggttagccactaatcctacaaccc acaacgctggtaaagtatcaggggcccctgactactggcctacatcagaagctcattttgccgacttactgaacacatac gtcacccaaataagttcaggtcaaagacatgctagagaactagtcatcacttatagtagtacctccagtgtatacagtat tgatgcgagctacgtacgttttcaacataagttatttgccaatgccaaagcagagatagaagccatggatgccatgcaga gcttggtagccactcagttcacagacagtgaatgctttccttacagtagacagtatcttacctgggaaacaaataaggtg atccagtctgagttatacagaaaccttggtctggcggcagcctgtgtgtttgtggtcactctgatcctcatagccaatct atggacaagtctaatggttttcatctgtgtcatcatgacactggttgatgtggctggaatgatgcacttatggggtctta cagtggacacagtgaccagtataaatctaattatagccattggtctggcagtggattactctgctcacattggtcactgc tttatgaccattagtggagagagaaatgaccgagtgaaggccaccttagtagagataggagcccctgtatttagtggtgg attcagtactttccttgcctttatattgttagctgccagtactagttatgtcttcagaactttctttaaagtatttttcc tagtagtaatattcggcctgtttcacgggttagcattcctgcccgttctcttgtcatggatagggccatctccatacctc tccgcagacaaacgttaccaggacccagaattcaagcatccagagcatgatctacagggttttgataacaaagctatgga catgaaacagaaatctaatggtaagattaggacaccacctccagactatgaagattccaggatgccgtacatacctcccc ctgactacacgccccctgccacacgtaaagcaggaaccataactcctgtcaacacctag |
|
Protein
| Protein ID | pfu_aug2.0_35.1_16749.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_35.1_16749.t1 MSETKTNGYMNGSPSHMNGKPSQNGYMNGKPTQNGHPGSPVPGGSKDAPKPNIFKRFSDKIISGLEFAFYKLGCLIGTHP WKTILLVVFITALLVIGVIRFEETNDNDAIWVPEDSINVAHKEFVDAKFSQPQFVYLIFTGGNVLSATYIQSLFQAYKTI SDLGNLTAVCAKSGSNCRVNSILELWSYDETTINALNDATVKTAVNTITTSPMYYNDFDATTVLGEISRDGSGDIDSAKA AKMTFFLLGEDAYKDNSESWQKLAIDRSLTGYSGISNTYVFATRSFSDEGGNAISDDIKFLSSGYMLVIVFIWIILSRFN LRDQRIALTITGLLVVGFGLGMSFGLSSAAGWKYGPLHSILPFLLLGIGVDDLFVIHGSLNSLSHHDHQKPVSEITGRML KHAGVSILVTSVTDVMAFGIGATTTLPALKSFCVFSCIGIVGLFCYAATFFVACVTIDLNRTRQERDGCLCCYVHKNYTP NKCSERNLLVTFMQKFYAKFLLKLPVKIVVTVITAGLLGLNIWGFVNLEQNFNQDWFIPTDSYAYDYLQAQDKYFPDNGA LANVYCKSITYSSKKSNFESLYTSLGSSQYVSNGTVDSWYKSYTEWLATNPTTHNAGKVSGAPDYWPTSEAHFADLLNTY VTQISSGQRHARELVITYSSTSSVYSIDASYVRFQHKLFANAKAEIEAMDAMQSLVATQFTDSECFPYSRQYLTWETNKV IQSELYRNLGLAAACVFVVTLILIANLWTSLMVFICVIMTLVDVAGMMHLWGLTVDTVTSINLIIAIGLAVDYSAHIGHC FMTISGERNDRVKATLVEIGAPVFSGGFSTFLAFILLAASTSYVFRTFFKVFFLVVIFGLFHGLAFLPVLLSWIGPSPYL SADKRYQDPEFKHPEHDLQGFDNKAMDMKQKSNGKIRTPPPDYEDSRMPYIPPPDYTPPATRKAGTITPVNT |
|