Gene
| Gene Model ID | pfu_aug2.0_35.1_16751 |
|---|---|
| Locus | scaffold35.1 : 196394 ... 211586 : + |
| To GenomeBrowser | scaffold35.1:196394..211586 |
| Genes list of scaffold | scaffold35.1 |
| Synonym | pfu_aug1.0_2441.1_37270 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_35.1_16751.t1 | 3 | 1 | RRM_1 | 51 | 105 | 2.9e-20 | 71.6 | 0.0029 | 15.0 | 5.3 |
| pfu_aug2.0_35.1_16751.t1 | 3 | 1 | RRM_6 | 51 | 104 | 1.7e-14 | 53.5 | 9.6e-05 | 0.47 | 10.4 |
| pfu_aug2.0_35.1_16751.t1 | 3 | 1 | RRM_5 | 76 | 97 | 3.9e-08 | 33.0 | 0.2 | 970.0 | -0.3 |
| pfu_aug2.0_35.1_16751.t1 | 3 | 2 | RRM_6 | 125 | 187 | 1.7e-14 | 53.5 | 1.2e-07 | 0.00057 | 19.8 |
| pfu_aug2.0_35.1_16751.t1 | 3 | 2 | RRM_1 | 126 | 191 | 2.9e-20 | 71.6 | 1.3e-11 | 6.5e-08 | 32.0 |
| pfu_aug2.0_35.1_16751.t1 | 3 | 2 | RRM_5 | 138 | 181 | 3.9e-08 | 33.0 | 0.00024 | 1.2 | 9.0 |
| pfu_aug2.0_35.1_16751.t1 | 3 | 3 | RRM_1 | 214 | 282 | 2.9e-20 | 71.6 | 5.8e-11 | 2.9e-07 | 30.0 |
| pfu_aug2.0_35.1_16751.t1 | 3 | 3 | RRM_6 | 214 | 279 | 1.7e-14 | 53.5 | 1.5e-07 | 0.00074 | 19.4 |
| pfu_aug2.0_35.1_16751.t1 | 3 | 3 | RRM_5 | 250 | 287 | 3.9e-08 | 33.0 | 1.1e-07 | 0.00054 | 19.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_35.1_16751.t1 | gi|524907670|ref|XP_005108951.1| | PREDICTED: fibroin heavy chain-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_35.1_16751.t1 | gi|676433225|ref|XP_009046830.1| | hypothetical protein LOTGIDRAFT_172000 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_35.1_16751.t1 | gi|641670084|ref|XP_008185057.1| | PREDICTED: ribonucleoprotein PTB-binding 1-like isoform X1 [Acyrthosiphon pisum] | 3.9937e-43 |
| pfu_aug2.0_35.1_16751.t1 | gi|260818029|ref|XP_002603887.1| | hypothetical protein BRAFLDRAFT_241985 [Branchiostoma floridae] | 5.00264e-43 |
| pfu_aug2.0_35.1_16751.t1 | gi|328716359|ref|XP_003245909.1| | PREDICTED: ribonucleoprotein PTB-binding 1-like isoform X2 [Acyrthosiphon pisum] | 1.00053e-42 |
Transcript
| Transcript ID | pfu_aug2.0_35.1_16751.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_35.1_16751.t1 atggcggcggccatgcgaaacagtggagtttacaactcctctgaaaatcaggttcatattggacaaaacatccaactaac aagggatcaaatccctctgagtaataaagatttgattattttgtataatgaattctacaaagaccgagaaattgtgatca ataaccttccagacggaacacctgaggtggaagtacaaagtttcctggggaattatacatcaaagtccatcaacatatca gaaaatggtagacatgctgttgtcgtacttgaaaatggagaagaaactcgagagtttttagataagatggagagatcatt aacagaggaaagcaccgtaaatgtgtctatacgtccctgccaaaacttactatgtatagcacatcttccacataacttct ctgaccagcagctgagagactttgtctctccaattggctcatgcaagaaatgttttatctacagaacagcagagtcaggt tcaaaaagatggtatggttttgttgaatttgatggatccgtagatgaagtgaaatctatacagaaggaacttgactggcg agaaacagggggacttaaagtacactgtgacattgttaacccagaacttgtaaaataccagcaacttaactcaaagtgtt tattcattgataatttaccaaaggactattgtgatgtagcagatttcagggaatttttcagctgccattcaagacctttg tactgccaaattgttatgaaggatggtgagtccctgggttacggtattatacagtacaagacatggcaagaagctgagaa gtcagaacaaactcttaacggtcgtaaaataaacaacgtagcgatccgtataacatactgtataccaggaatgtcagcgg tggctatctgtacacggataatgaataaatacgagaacatggaagtgaagagcaagcccagtctattacctgacccggtg tgtcccagtaaagagatagttaaccatcctcttatatacgaacttagcaaacaacacccaaacttggtatcaaagtttga ccaatgtctacaagaactgcagaaacagtatatcaaacaactgacaacaagaacagataaaccagttccagtcacaagca cctccacaggtaagatgaactataatctacagtttggtttgattacattgttagctctacagttccagtcacaagcacct ccacaggtcaggtggtcagtaaacttaatggaccttctatggcagcatctggaaagtgctgaacctgatgatggtacatc gattcttggggatcccttatcagcacaggccaacattatactgcaaaacttggtatctcagctggtacccagcgacgctg atgcatcggagaaggccagcccgcagaaactgatggagaaaagtgtatcgtcaatgttacagactctatccaaagacata cagagtataaacttacacagcttggctagtctgggacgtctggctctacaactcaatactggacagtctcagccatcagg tgtgttaggcagtgacccccagtccaacgggaattcaggactgccgagtctaatgagtcttaatgtacaaaagtactctg gtgcagatggacttttaggggctgcaccgaaaaatgtggcaccgaacactggtcagaacttccttcataatctgaacatg ttttcacgtgagaaaggactgttacagagtacgggcggactggcctctatactggagaagataaaccagagtaacggagg aagctccttattaggggaacccccaccagaggttaaaaactggttgattaataggacatcaggagcgggggcaggtatgg gagaagactctgatacttatccaagcagcttcagaagtgggggtgtaaaaaagaaacttgatagctcatactcaagccca ttcgatcagggatactatgaagatgatggttacagtagctatacacaggaagatgagggtcactataatcagagatcaga cttctcaaaataccaaaatacaaggaactttgacatctcagggaatcaaagcaataaataccaggatattgctagccaag cagctttatatgccgctagtaagacatatggtaactatggctacggtaactacggcagctctcaggattacggcagctac agcagcatgtaccgaggtcaagggaggggaagcttgtcagagagtggctcctacaacatgggcaggggcagcttgtcaga gagtggctacaaattcactcccaatcctcctaaatttgattttagctccacacctaaacctccacagcatttagggatgg ggatgatgtcagcaggtagaagctactcaagttctggatctggcagcaatcagatgactcccactggccagaagagaagt tacagtcaattgttacctccccctgaacccagcccggagggggattatgtcgggcagcactcccaggggataggtgggca ttacgcagagacatataccaacaaacgacggaaactggacaactttggccggttattacagtattaa |
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Protein
| Protein ID | pfu_aug2.0_35.1_16751.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_35.1_16751.t1 MAAAMRNSGVYNSSENQVHIGQNIQLTRDQIPLSNKDLIILYNEFYKDREIVINNLPDGTPEVEVQSFLGNYTSKSINIS ENGRHAVVVLENGEETREFLDKMERSLTEESTVNVSIRPCQNLLCIAHLPHNFSDQQLRDFVSPIGSCKKCFIYRTAESG SKRWYGFVEFDGSVDEVKSIQKELDWRETGGLKVHCDIVNPELVKYQQLNSKCLFIDNLPKDYCDVADFREFFSCHSRPL YCQIVMKDGESLGYGIIQYKTWQEAEKSEQTLNGRKINNVAIRITYCIPGMSAVAICTRIMNKYENMEVKSKPSLLPDPV CPSKEIVNHPLIYELSKQHPNLVSKFDQCLQELQKQYIKQLTTRTDKPVPVTSTSTGKMNYNLQFGLITLLALQFQSQAP PQVRWSVNLMDLLWQHLESAEPDDGTSILGDPLSAQANIILQNLVSQLVPSDADASEKASPQKLMEKSVSSMLQTLSKDI QSINLHSLASLGRLALQLNTGQSQPSGVLGSDPQSNGNSGLPSLMSLNVQKYSGADGLLGAAPKNVAPNTGQNFLHNLNM FSREKGLLQSTGGLASILEKINQSNGGSSLLGEPPPEVKNWLINRTSGAGAGMGEDSDTYPSSFRSGGVKKKLDSSYSSP FDQGYYEDDGYSSYTQEDEGHYNQRSDFSKYQNTRNFDISGNQSNKYQDIASQAALYAASKTYGNYGYGNYGSSQDYGSY SSMYRGQGRGSLSESGSYNMGRGSLSESGYKFTPNPPKFDFSSTPKPPQHLGMGMMSAGRSYSSSGSGSNQMTPTGQKRS YSQLLPPPEPSPEGDYVGQHSQGIGGHYAETYTNKRRKLDNFGRLLQY |
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