Gene
| Gene Model ID | pfu_aug2.0_35.1_16754 |
|---|---|
| Locus | scaffold35.1 : 251394 ... 274898 : + |
| To GenomeBrowser | scaffold35.1:251394..274898 |
| Genes list of scaffold | scaffold35.1 |
| Synonym | pfu_aug1.0_5795.1_16774 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_35.1_16754.t1 | 1 | 1 | Kringle | 75 | 150 | 1.7e-18 | 66.4 | 2.6e-21 | 4.8e-18 | 65.0 |
| pfu_aug2.0_35.1_16754.t1 | 5 | 1 | fn3 | 320 | 386 | 5.90003e-41 | 138.4 | 1.6e-07 | 0.00029 | 20.8 |
| pfu_aug2.0_35.1_16754.t1 | 4 | 1 | Interfer-bind | 359 | 392 | 1.7e-10 | 40.8 | 0.072 | 130.0 | 2.6 |
| pfu_aug2.0_35.1_16754.t1 | 5 | 2 | fn3 | 427 | 503 | 5.90003e-41 | 138.4 | 5.2e-06 | 0.0097 | 16.0 |
| pfu_aug2.0_35.1_16754.t1 | 4 | 2 | Interfer-bind | 427 | 518 | 1.7e-10 | 40.8 | 3.6e-07 | 0.00067 | 19.6 |
| pfu_aug2.0_35.1_16754.t1 | 5 | 3 | fn3 | 523 | 610 | 5.90003e-41 | 138.4 | 2.6e-18 | 4.8e-15 | 55.4 |
| pfu_aug2.0_35.1_16754.t1 | 4 | 3 | Interfer-bind | 547 | 610 | 1.7e-10 | 40.8 | 5.4e-05 | 0.1 | 12.6 |
| pfu_aug2.0_35.1_16754.t1 | 5 | 4 | fn3 | 626 | 701 | 5.90003e-41 | 138.4 | 6.9e-14 | 1.3e-10 | 41.2 |
| pfu_aug2.0_35.1_16754.t1 | 4 | 4 | Interfer-bind | 651 | 694 | 1.7e-10 | 40.8 | 0.92 | 1700.0 | -1.0 |
| pfu_aug2.0_35.1_16754.t1 | 5 | 5 | fn3 | 718 | 757 | 5.90003e-41 | 138.4 | 0.0044 | 8.1 | 6.6 |
| pfu_aug2.0_35.1_16754.t1 | 2 | 1 | Y_phosphatase | 954 | 1172 | 0.0 | 444.3 | 0.0 | 0.0 | 243.5 |
| pfu_aug2.0_35.1_16754.t1 | 2 | 2 | Y_phosphatase | 1233 | 1467 | 0.0 | 444.3 | 0.0 | 0.0 | 198.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_35.1_16754.t1 | gi|617458701|ref|XP_007571222.1| | PREDICTED: receptor-type tyrosine-protein phosphatase S-like isoform X2 [Poecilia formosa] | 0.0 |
| pfu_aug2.0_35.1_16754.t1 | gi|583982909|ref|XP_006786747.1| | PREDICTED: receptor-type tyrosine-protein phosphatase delta-like isoform X4 [Neolamprologus brichardi] | 0.0 |
| pfu_aug2.0_35.1_16754.t1 | gi|554819732|ref|XP_005920610.1| | PREDICTED: receptor-type tyrosine-protein phosphatase delta-like isoform X3 [Haplochromis burtoni] | 0.0 |
| pfu_aug2.0_35.1_16754.t1 | gi|583982907|ref|XP_006786746.1| | PREDICTED: receptor-type tyrosine-protein phosphatase delta-like isoform X3 [Neolamprologus brichardi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_35.1_16754.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_35.1_16754.t1 atgaatgaaaataaagcaaaagatgaattcgttctgctgaaagcggacttgaataatctacaacgtgaatgtaaggacgg gacgtttgggtacagatgtcattacagatgtcgctgttacaacgacagaaagtgtgacaaacggacgggggagtgtcctc agggacgctgtgcggagggatactggggaccaggatgtcagctgactaacaactgtttttacaacggatatgctcggaat tacatggggacaaaatcactgacggatagcctactggagtgccaacactgggagacccaaataccacatagacactccta ccacgccagggattttccggataaaaagttcccggagaattactgccggacaacagaggactctgccaggccatggtgct atacgaagaagaaggagaaacgatgggaacattgtaatgtgaacaactgcaactgtccggcggggagatttggacataac tgtgagaaggagtgtcactgtgcggatatcagtgaggcgtgtgacagcatgctggggctgtgctctagtgggtgtgccca agggtggggcggctatgcctgtcaatcacttattgcaccgaagtttgtcagcttttccaacgtgcaagtgaatcctggta atgccactgtctttaactgcactgtgactgcatacccgaccccaatggccagtgagatatctctacatggacccccagac agaaggatagctctactgaagagtaaggaactcgccccgtacctctacaccagggtcaatctgttcagggtggactcggt gaaacagaatgaaatgtttacatgtgtggttagagggatcgcagggaccaactcacagacaattaggaccaacgtttacg atctccccgttctggtcagaccaccttttgtatctgaggaaggaccaggtgtaacagacatcaccatcaaatggttacca tggagtcagtcacgtggggacaaaggagacccgcccatcctgtggtacaatatatatttaagagacatcaagagtaactc cgaaaggaaaattggtatagcgacccatctgaattgtggaatagaatgtaattacaccctggatggactgaaaccgaaca ccgagtacgccattaggatctccacccagaggatcggacagggaggggaaggggaacctggaccacccttatacacaagc acagagtgttcagccccaaaattggcgcccattttacattcggtgacgtcatcgtttgagtacaattcctcctacccaga gacccagatcatagtcatgtggaaggatccgcccaaacattcttggaactgtgataacatcagtgcttaccagatacatc tgagcagtaccagcgccaccttgcagctacagtctgtacacgtgtcaggggacacaactggggattctaaaaatatcaaa agtgcattgatacctgatttgaacccgggcactgagtactgtgttcgaatgagctttactaacgaaaagagattttatag cccccactctgataagatgtgcactgtgacaccaagtacaacaccatcggctcccagaaatctgaagttgataaagagat ctagttcttccctgacattgtcatggcagcagcctctgttgtctgctggtacaatttacgtgtacagactgacctattgg aagggttcatggcgggaattatccagtaagagagccgacatccagccgtcatcatccgtcctacaacacaccatagataa cctagaacctcacactcaatacagcattgaggtgacagctttgaacaatgctggagcgggagaaacgtctaatgtcctca ctgtatccaccgaggaaagtgtacccggcgaggtgactgtactcaaaaacatatcaagaacagatgagtccattaccttg tcatggcaaaaaccttctgtcaacggtgaactattggcctactcagtgtcctgtacagacggacatggctctgtggtgga ggctaacatagcgaggacattactacgtcacactttccgtggactgagtccagccacacactatagctgtggtgtacatg ccagtacaagtaaagggtcgggaatcacaaaatacatatctgtctggaccctagctacagacccacgtgagcctccttcg cccagcatcctggagcgagacgaaacaacgatcaccatatccttgtaccctgttgaagacaaaactgtcagcttctaccg aatcatagtggagcaaacagaaagtaaccgcatccggaaacgtgggatcaatgacagaattcgtgacgtcagatccgatt ttcagactgcgcagactcgtgggtctagtgcatacgttgctgcccaattacagaaggaccatgcttttaaacactttgtt gtcggtgataaccagacttacggcggttactacaacgctcccctggatacggaacagcaatacgacgtctggtatggagc gttctcaatggttgacgggacggtgagaaaatcgtttgccaaggctgccagagtagaagcccctcgtgtagccacagctc cagaaaacagccatatccctgtcatcgtagccgtcatcatcgtctttatccttctcatcctcatctttgcgctctcatta ttcttatggaggaaaacgccatctagcatcagaacgagagaaggcggagatgccaaactttggaccaaccattattccgg aaccggaaacatcaacgccgtcaacaccagtcgaaatggcaatttggttcaagagttgttcttggtcttttcagatgatc tagagatagaaccgctaatagaaccaagttctggtaatgaaactgaatgtgaacctgtctatgatgaccacagccgggta cttttgaccccagtgtcagacgatcccactgacgactactcaaacgctaattacatagatggttacaagaagtcgaaagc atatattgcagcccaaggtccaacgaaacctacagtaaatgacatatggcgaatggcgtgggagatgaagtccagaacag ttataatgttgaccaaccctacagaaacaggcaagaaaaagtgtgagcagtattggccggactctggtcgccatgactac ggaggcattgttgtagaatttgtggatgtagaacaattttccaacttctgtatacgaacattccaattatataaaggagg tgagaaattagaggtaaaacagttccattacaccacgtggccggaccacggtgtacccaggtttggacactcaattctcg ccttcagacagaagattcgagcctatgacaagctagagaatggaccaccaatcgtccactgcagtgctggtgtggggagg acagggacgtatatagctattgacgtcaacctagagcaggccaaacaggaggggatcatagatgtacataatcacgtaca gatcatgaggacacaaagagtcaacatggtccaaactctggaacagtacatatttgtatatgacgtgctgttggaggccc tgatttgcggggagacaaccgtgtcagtagacgcttacagggatatcctggatgacttactacagtacgaccaaagtata gccaaaacaaaaatagaggaacaatatgaggttttgaatctaataacgtccataatagagcgggatgagacaacgacggg actacgccctgaaaatgtcttcaaaaacagaaacaaaacaattgtacctgcaaacagatgccgaccatatctgataacac ccgtggaagattacaacaactatatcaacgctgtatttctggatagtttccggcggaaggacgcttacatcattacccag atgccacttccgctgacagctgtagatttctggcggctaatttatgaccacaattcatactgtattgtcatgctgaacga agtagacaaagctgacgagacttgtgtagcatactggacgctggacacatgtggagagagcttcggtccattcatagtag agaccacagcagaaatcaaatcagaccccagtgttactgtcagggacttcactatcacaaatacactcaatcctcaggaa atgccacgagttgtccgtcagtttaacttccaccgttggacagagggcagtgcagtccccagctctaaggcggctctcct ggagttactagacaacgtgggtaaatggcagggtcagagtggaaacaagcctgtcacagtccactgcctggatggagcag caaagagcggtctgttcgtagcctccagttgtatattagagagagtcaagacggagaaagaggtggatgtcttccaaacc atcaaacagatgagactgaatagaccacaactcatagatagcttggaacaattcaagttttgtcatgaaattgccttgga atttttgaactcttcttcacaacccaatggcgcctcctga |
|
Protein
| Protein ID | pfu_aug2.0_35.1_16754.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_35.1_16754.t1 MNENKAKDEFVLLKADLNNLQRECKDGTFGYRCHYRCRCYNDRKCDKRTGECPQGRCAEGYWGPGCQLTNNCFYNGYARN YMGTKSLTDSLLECQHWETQIPHRHSYHARDFPDKKFPENYCRTTEDSARPWCYTKKKEKRWEHCNVNNCNCPAGRFGHN CEKECHCADISEACDSMLGLCSSGCAQGWGGYACQSLIAPKFVSFSNVQVNPGNATVFNCTVTAYPTPMASEISLHGPPD RRIALLKSKELAPYLYTRVNLFRVDSVKQNEMFTCVVRGIAGTNSQTIRTNVYDLPVLVRPPFVSEEGPGVTDITIKWLP WSQSRGDKGDPPILWYNIYLRDIKSNSERKIGIATHLNCGIECNYTLDGLKPNTEYAIRISTQRIGQGGEGEPGPPLYTS TECSAPKLAPILHSVTSSFEYNSSYPETQIIVMWKDPPKHSWNCDNISAYQIHLSSTSATLQLQSVHVSGDTTGDSKNIK SALIPDLNPGTEYCVRMSFTNEKRFYSPHSDKMCTVTPSTTPSAPRNLKLIKRSSSSLTLSWQQPLLSAGTIYVYRLTYW KGSWRELSSKRADIQPSSSVLQHTIDNLEPHTQYSIEVTALNNAGAGETSNVLTVSTEESVPGEVTVLKNISRTDESITL SWQKPSVNGELLAYSVSCTDGHGSVVEANIARTLLRHTFRGLSPATHYSCGVHASTSKGSGITKYISVWTLATDPREPPS PSILERDETTITISLYPVEDKTVSFYRIIVEQTESNRIRKRGINDRIRDVRSDFQTAQTRGSSAYVAAQLQKDHAFKHFV VGDNQTYGGYYNAPLDTEQQYDVWYGAFSMVDGTVRKSFAKAARVEAPRVATAPENSHIPVIVAVIIVFILLILIFALSL FLWRKTPSSIRTREGGDAKLWTNHYSGTGNINAVNTSRNGNLVQELFLVFSDDLEIEPLIEPSSGNETECEPVYDDHSRV LLTPVSDDPTDDYSNANYIDGYKKSKAYIAAQGPTKPTVNDIWRMAWEMKSRTVIMLTNPTETGKKKCEQYWPDSGRHDY GGIVVEFVDVEQFSNFCIRTFQLYKGGEKLEVKQFHYTTWPDHGVPRFGHSILAFRQKIRAYDKLENGPPIVHCSAGVGR TGTYIAIDVNLEQAKQEGIIDVHNHVQIMRTQRVNMVQTLEQYIFVYDVLLEALICGETTVSVDAYRDILDDLLQYDQSI AKTKIEEQYEVLNLITSIIERDETTTGLRPENVFKNRNKTIVPANRCRPYLITPVEDYNNYINAVFLDSFRRKDAYIITQ MPLPLTAVDFWRLIYDHNSYCIVMLNEVDKADETCVAYWTLDTCGESFGPFIVETTAEIKSDPSVTVRDFTITNTLNPQE MPRVVRQFNFHRWTEGSAVPSSKAALLELLDNVGKWQGQSGNKPVTVHCLDGAAKSGLFVASSCILERVKTEKEVDVFQT IKQMRLNRPQLIDSLEQFKFCHEIALEFLNSSSQPNGAS |
|