Gene
| Gene Model ID | pfu_aug2.0_35.1_16755 |
|---|---|
| Locus | scaffold35.1 : 278514 ... 293573 : - |
| To GenomeBrowser | scaffold35.1:278514..293573 |
| Genes list of scaffold | scaffold35.1 |
| Synonym | pfu_aug1.0_44590.1_12559 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cytoplasmic type 5 isoform x1 | GO:0000281 GO:0001895 GO:0002119 GO:0005200 GO:0005524 GO:0005634 GO:0005886 GO:0005938 GO:0006898 GO:0007126 GO:0009792 GO:0016887 GO:0030016 GO:0031941 GO:0040007 GO:0040035 GO:0040039 GO:0042802 GO:0045214 GO:0070062 GO:0070527 GO:0071688 GO:0072562 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_35.1_16755.t1 | 1 | 1 | Actin | 4 | 376 | 0.0 | 543.2 | 0.0 | 0.0 | 543.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_35.1_16755.t1 | gi|170587336|ref|XP_001898433.1| | actin 2 [Brugia malayi] | 0.0 |
| pfu_aug2.0_35.1_16755.t1 | gi|339249175|ref|XP_003373575.1| | actin-5C [Trichinella spiralis] | 0.0 |
| pfu_aug2.0_35.1_16755.t1 | gi|17557190|ref|NP_505818.1| | ACT-2 [Caenorhabditis elegans] | 0.0 |
| pfu_aug2.0_35.1_16755.t1 | gi|288541396|ref|NP_001165634.1| | actin, cytoplasmic type 5 [Xenopus laevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_35.1_16755.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_35.1_16755.t1 atggcagacgaagacgttgcagctttagttattgacaatggatctggtatgtgcaaggctgggttcgcaggggacgatgc ccctcgtgccgtcttcccctccatcgtcggcagacccaggcatcagggtgtgatggttggtatgggacagaaggacagct atgtaggagacgaggcccagagtaagagaggtatcctcaccctcaaataccccattgagcacggtattgtcacaaactgg gacgatatggagaagatctggcatcataccttctacaatgaactccgtgtggcccccgaggaacaccctgttctcctgac cgaggctccactgaacccaaaggcaaacagagaaaagatgacacagatcatgtttgaaaccttcaactctcccgccatgt acgtagctatccaggccgtactgtcactgtacgcttctggccgtactacaggtatcgtactggactctggggatggtgtc acccacacagtacctatctacgagggatacgcccttccccacgccatcatgaggttggatcttgccggacgtgatctcac agattaccttatgaagatcctcacagagcgtggctactcattcaccaccacagctgagagagaaatcgtaagagacatta aagaaaaattgtgctatgtcgccctagactttgaacaagaaatggctaccgccgcgtcatcatcatctctagagaagagt tacgaacttcccgacggtcaggtcatcaccattggcaacgaaaggttcagatgtcccgaggcaatgttccagccatcttt cctcggtatggaatctgcgggtatccacgaaacaacatacaacagtattatgaaatgtgacgtagacattcgtaaagact tgtacgcaaacactgttttatctggtggttctaccatgtacccaggtatcgctgaccgtatgcagaaagaaatcacagct cttgctccatcaacaatgaaaatcaagatcatagctccaccagagaggaaatactccgtgtggatcggtggatctatcct cgcttctctctccaccttccagcagatgtggatcagcaaacaggaatacgacgagtccggtccatccatcgtccacagga agtgcttctaa |
|
Protein
| Protein ID | pfu_aug2.0_35.1_16755.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_35.1_16755.t1 MADEDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV THTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITA LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |
|