Gene
| Gene Model ID | pfu_aug2.0_35.1_16756 |
|---|---|
| Locus | scaffold35.1 : 293620 ... 324443 : - |
| To GenomeBrowser | scaffold35.1:293620..324443 |
| Genes list of scaffold | scaffold35.1 |
| Synonym | pfu_aug1.0_3120.1_51894 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| actin-5c | GO:0000281 GO:0002121 GO:0005200 GO:0005524 GO:0005737 GO:0005811 GO:0005875 GO:0005884 GO:0006909 GO:0007010 GO:0007291 GO:0016319 GO:0031011 GO:0032507 GO:0035148 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_35.1_16756.t1 | 3 | 1 | Actin | 4 | 374 | 0.0 | 912.7 | 0.0 | 0.0 | 531.0 |
| pfu_aug2.0_35.1_16756.t1 | 3 | 2 | Actin | 393 | 432 | 0.0 | 912.7 | 1.8e-16 | 6.7e-13 | 47.8 |
| pfu_aug2.0_35.1_16756.t1 | 3 | 3 | Actin | 431 | 669 | 0.0 | 912.7 | 0.0 | 0.0 | 333.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_35.1_16756.t1 | gi|297591985|ref|NP_001172074.1| | actin related protein 1 [Apis mellifera] | 0.0 |
| pfu_aug2.0_35.1_16756.t1 | gi|498972844|ref|XP_004527412.1| | PREDICTED: actin, cytoplasmic A3a [Ceratitis capitata] | 0.0 |
| pfu_aug2.0_35.1_16756.t1 | gi|675889656|ref|XP_009030330.1| | hypothetical protein HELRODRAFT_96235 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_35.1_16756.t1 | gi|751778927|ref|XP_011198527.1| | PREDICTED: actin, cytoplasmic A3a isoform X1 [Bactrocera dorsalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_35.1_16756.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_35.1_16756.t1 atggcagacgaagacgttgcagctttagttattgacaatggatctggtatgtgcaaggctgggttcgcaggagacgatgc ccctcgtgccgtcttcccctccatcgtcggcagacccaggcatcagggtgtgatggttggtatgggacagaaggacagct atgtaggagacgaggcacagagtaagagaggtatcctcaccctcaaataccccattgaacacggtattgtcacaaactgg gacgatatggagaagatctggcatcataccttctacaatgaactccgtgtggcccccgaagaacaccctgttctcctgac tgaggctccactcaacccaaaggcaaacagagagaagatgacacagatcatgtttgaaaccttcaactgtcccgccatgt acgtagctatccaggccgtactgtcactgtatgcttccggtcgtacaacaggtatcgtgctggactctggggatggggta tcacatacagtacctatctacgagggatacgcccttcctcacgccattttgaggttagatcttgccggacgtgatctcac agattaccttatgaagatcctcacagagcgtgggtactcattcaccaccacagctgagagagaaatcgtcagagacatca aagaaaaattggcctatgttgccctagactttgaacaagaaatggctaccgccgcatcatcatcaactctagagaagagt tacgaacttcccgacggccaggtcatcaccattggtaacgaaaggttcagaacccccgaagccatgttccagccatcttt cctaggtatggaatctgcaggtatccatgaaacaacatacaacagtataatgaagtgtgacgtagacattcgtaaagact tatatgcaaataccgtactttctggtggtaccactatgtttccgggaattgctgaccgtatgcagaaagaaattacagcc cttgcaccgcagacgatgaaaatcaagatcatagctccaccagagaggaaatactccgtgtggatcggtggatctatcct tgcttctctctccaccttccaacagatgtggatcagcaaacaagaatacgacgagtctggtccatccatcgtccacagga aaaacagcgcaaaacacgcttctgtcccaaacttccacacaagaaaaatggcagacgaagacgttgctgctttagttatt gacaatggatctggtatgtgtaaagctggattcgcaggagacgatgcccctcgtgccgtcttcccctccatcgtcggcag acccaggcatcaggccgtactgtcactgtatgcttccggtcgtactacaggtatcgtactggactctggagatggggtat cacacacagtacccatctacgaaggatacgcccttcctcacgccattttgagattagatctcgccggacgtgatctcaca gattaccttatgaagatcctcacagagcgaggctactcattcaccaccacagctgagagagaaatcgtcagagacattaa agaaaaattgtgctatgtcgccttggactttgaacaagaaatggctaccgccgcatcatcatcttctctagaaaagagct atgaacttcccgacggtcaggtcatcaccattggtaacgaaaggttcagggccccagaggccatgttccagccatccttc ctcggtatggaagctgctggtttgcatgaaacaacatacaacagtatcatgaaatgtgacgtagacattcgtaaagattt gtacgcaaataccgttttatctggtggttctaccatgtacccaggtattgctgaccgtatgcagaaagaaataacagctc ttgctccatcaacaatgaaaatcaagatcatagctccaccagagaggaaatactctgtgtggattggtggatctatcctc gcttctctctccaccttccagcagatgtggatcagcaagcaggaatacgacgagtctggtccatctatcgtccacagaaa gtgcttttag |
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Protein
| Protein ID | pfu_aug2.0_35.1_16756.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_35.1_16756.t1 MADEDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGV SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAASSSTLEKS YELPDGQVITIGNERFRTPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITA LAPQTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKNSAKHASVPNFHTRKMADEDVAALVI DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRAPEAMFQPSF LGMEAAGLHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL ASLSTFQQMWISKQEYDESGPSIVHRKCF |
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