Gene
| Gene Model ID | pfu_aug2.0_35.1_16760 |
|---|---|
| Locus | scaffold35.1 : 344320 ... 346473 : - |
| To GenomeBrowser | scaffold35.1:344320..346473 |
| Genes list of scaffold | scaffold35.1 |
| Synonym | pfu_aug1.0_86513.1_42174 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cytoplasmic a3a | GO:0005524 GO:0005737 GO:0005856 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_35.1_16760.t1 | 1 | 1 | Actin | 7 | 332 | 0.0 | 473.5 | 0.0 | 0.0 | 473.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_35.1_16760.t1 | gi|478533584|ref|XP_004440930.1| | PREDICTED: actin, cytoplasmic 1 isoform 1 [Ceratotherium simum simum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_35.1_16760.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_35.1_16760.t1 atggttggtatgggacagaaggacagctatgtaggagacgaggcccagagtaagagaggtatcctcaccctcaaataccc cattgaacacggtattgtcacaaactgggacgatatggagaagatctggcatcataccttctacaatgaactccgtgtgg cccccgaggaacaccctgttctcctgaccgaggctccactcaacccaaaggcaaacagagaaaagatgacacagatcatg tttgaaaccttcaactctcccgccatgtacgtagctatccaggccgtgctctcactgtacgcttccggtcgtactacagg tatcgtactggactctggggatggggtatcacatacagtacctatctacgagggatacgcccttccccacgccattttga gattagatcttgccggacgtgatctcacagattaccttatgaagatcctcacagagcgtggctactcattcaccaccaca gctgagagagaaatcgtcagagacattaaagaaaaattgtgctatgttgccttagactttgaacaagaaatggctaccgc cgcatcgtcatcttctctagagaagagttacgaacttcccgacggtcaggtcatcaccattggtaacgaaaggttcaggg cccctgaggcaatgttccagccatctttcctcggtatggaatcttcgggtatacatgaaacaacatacaacagtataatg aaatgtgacgtagacattcgtaaagacttgtacgcaaataccgttttatctggtggttctaccatgtacccaggtattgc tgaccgtatgcagaaagaaatcacagctcttgctccatcaacaatgaaaatcaagatcatagctccaccagagaggaaat actcggtgtggattggtggatctatcctcgcttctctctccaccttccagcagatgtggatcagcaaacaggaatacgac gagtccggtccatccatcgtccacaggaagtgcttttaa |
|
Protein
| Protein ID | pfu_aug2.0_35.1_16760.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_35.1_16760.t1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRAPEAMFQPSFLGMESSGIHETTYNSIM KCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYD ESGPSIVHRKCF |
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