Gene
| Gene Model ID | pfu_aug2.0_350.1_00646 |
|---|---|
| Locus | scaffold350.1 : 267717 ... 302919 : - |
| To GenomeBrowser | scaffold350.1:267717..302919 |
| Genes list of scaffold | scaffold350.1 |
| Synonym | pfu_aug1.0_11.1_50544 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tgf-beta receptor type-1-like | GO:0000166 GO:0001501 GO:0001837 GO:0001936 GO:0005024 GO:0005057 GO:0005623 GO:0006355 GO:0006468 GO:0007178 GO:0007507 GO:0008284 GO:0009887 GO:0009967 GO:0010628 GO:0016020 GO:0019838 GO:0023014 GO:0031325 GO:0031399 GO:0035556 GO:0042981 GO:0043009 GO:0043167 GO:0045595 GO:0048523 GO:0048870 GO:0051128 GO:0071560 GO:2000026 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_350.1_00646.t2 | 2 | 1 | Fringe | 45 | 100 | 0.0 | 163.5 | 8.4e-10 | 2.1e-06 | 27.1 |
| pfu_aug2.0_350.1_00646.t2 | 2 | 2 | Fringe | 112 | 259 | 0.0 | 163.5 | 1.10002e-42 | 2.7e-39 | 134.9 |
| pfu_aug2.0_350.1_00646.t2 | 1 | 1 | Activin_recp | 262 | 341 | 4.9e-07 | 30.2 | 3.5e-10 | 8.6e-07 | 29.5 |
| pfu_aug2.0_350.1_00646.t2 | 1 | 1 | TGF_beta_GS | 429 | 454 | 8.1e-14 | 50.6 | 7.4e-17 | 1.8e-13 | 49.5 |
| pfu_aug2.0_350.1_00646.t2 | 1 | 1 | Pkinase_Tyr | 456 | 607 | 5.6e-21 | 74.7 | 4.5e-24 | 1.1e-20 | 73.8 |
| pfu_aug2.0_350.1_00646.t2 | 1 | 1 | Pkinase | 457 | 607 | 2.4e-32 | 112.1 | 1.6e-35 | 4.0e-32 | 111.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_350.1_00646.t2 | gi|632960649|ref|XP_007896315.1| | PREDICTED: TGF-beta receptor type-1-like [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_350.1_00646.t2 | gi|169234892|ref|NP_001108531.1| | TGF-beta receptor type-1 precursor [Danio rerio] | 0.0 |
| pfu_aug2.0_350.1_00646.t2 | gi|742197291|ref|XP_010892396.1| | PREDICTED: TGF-beta receptor type-1-like [Esox lucius] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_350.1_00646.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_350.1_00646.t1 atgatatgggtaatttttatcagtaatgaagattccgtcaaagaagtatttaacgaacgggaaatatctcgtgagttgag ggacgacaattttggaaacattcaaaacacgacagatgagagaccattcaacaaaataacattacaagatatcgtaatga ccgttaggacaacaacgaaaaattccgaaacaagaatgaaagctttatttgagtcatggttaccatccgcctttgataag agtgactatatttacgttttctctgatggcgaggaccaaaaagtatcaaacagagttccggtaatttctttgtcagcaag ttgtaatttttgcaggtggtattgcctattcgatgacgatatgtacctcaatgttgacaatttagtaacattgctgagag actatgattataatggtttgtggtacatcgggaaaaatgacagagagacaaagccacattacattccaagacaaaaatat cgaaacgtgacattttggttccataatagaggatctggaatatgccttagtagaggattatttgaaaaaatgaaaccgat cataagtgaggatggatttgctcaacttgcaccatcaataggacttctggatgaccttgttttgggattcatcattaatc atattctaaaggtgaatccgacgcatataaacctatttcattctcaatgggagaaaatggcagatattgagaacttagaa aagcagattactttaggatacaaagaagcgaacaagaattatttgaatgtagaaggtttcagtttaaaatgttactgtca ggaatgtgaaaacaggacctgtactacggatggattgtgtctaacgtcagtgtccatcgacaagaaaacgggtctgaaca agtatcgatacagatgcattgagaaaaaaaatacggacctttttccgagtggaccagaattgttctgtcaaagttcaatt aaaaaaaaattcagaagccatcagctatgctgtaacgaggaagatttttgtaatacaaaactaactccgaccttggcacc ccctacaacacgacctccagagggcagaccagactttcaacccagatcgactcggctggagttcgacacgttagagttag tggccttaatcaccggtcctgtcattttagtgtccattattttcatcgttgcgtttttcgcctatcgtcagtttcagcag aaacagcaacttcggcgtgtctatcttccggcagagcagtcacgagagtcgatgccgtttattcagccgggacaaaatac cgataccatacgggaaatgatatacgagtattcaggatcagggtccgggttacctctcttggttcagagaactattgccc gacaaatccagctttgtgaaattatcggtaaaggtcgattcggtgaagtgtggaggggaagatggcgagcagaaagcgta gcagtaaaaatattctcatctcgagaggagaggtcgtggttcagagaagccgagatttaccagaccgtgatgcttagaca cgaaaacattcttggttttattgctgctgataacaaagataacggtacatggacacaattatggttgatcacagattatc atgagaacggttcattgttcgactatttaaatagaacatcagtcacggtatctggtatgatacgtttagctttatccaca gcatgtggattagctcatctccacatggatattgtgggaacagaagtgcatactgggaagccagcaattgcgcacagaga cctcaaaagtaagaacatcctagtgagaagtaatgggacttgctgtatagcagatcttggtgagtactatggcatgatag gtgaaaataagttttggtga |
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| Transcript ID | pfu_aug2.0_350.1_00646.t2 |
| Definition | - |
>pfu_aug2.0_350.1_00646.t2 atgatatgggtaatttttatcagtaatgaagattccgtcaaagaagtatttaacgaacgggaaatatctcgtgagttgag ggacgacaattttggaaacattcaaaacacgacagatgagagaccattcaacaaaataacattacaagatatcgtaatga ccgttaggacaacaacgaaaaattccgaaacaagaatgaaagctttatttgagtcatggttaccatccgcctttgataag agtgactatatttacgttttctctgatggcgaggaccaaaaagtatcaaacagagttccggtaatttctttgtcagcaag ttgtaatttttgcaggtggtattgcctattcgatgacgatatgtacctcaatgttgacaatttagtaacattgctgagag actatgattataatggtttgtggtacatcgggaaaaatgacagagagacaaagccacattacattccaagacaaaaatat cgaaacgtgacattttggttccataatagaggatctggaatatgccttagtagaggattatttgaaaaaatgaaaccgat cataagtgaggatggatttgctcaacttgcaccatcaataggacttctggatgaccttgttttgggattcatcattaatc atattctaaaggtgaatccgacgcatataaacctatttcattctcaatgggagaaaatggcagatattgagaacttagaa aagcagattactttaggatacaaagaagcgaacaagaattatttgaatgtagaaggtttcagtttaaaatgttactgtca ggaatgtgaaaacaggacctgtactacggatggattgtgtctaacgtcagtgtccatcgacaagaaaacgggtctgaaca agtatcgatacaggtgctacaacttccgaggaaaattcattttgccatcagggccggcattttgtcggtcaaattacaaa caaactgaaagtaggatagtatgttgtaagacagaattctgtaataaacaaacgctacctactttaggttattctaaact ctccaaaaactcatcgtcagagggcagaccagactttcaacccagatcgactcggctggagttcgacacgttagagttag tggccttaatcaccggtcctgtcattttagtgtccattattttcatcgttgcgtttttcgcctatcgtcagtttcagcag aaacagcaacttcggcgtgtctatcttccggcagagcagtcacgagagtcgatgccgtttattcagccgggacaaaatac cgataccatacgggaaatgatatacgagtattcaggatcagggtccgggttacctctcttggttcagagaactattgccc gacaaatccagctttgtgaaattatcggtaaaggtcgattcggtgaagtgtggaggggaagatggcgagcagaaagcgta gcagtaaaaatattctcatctcgagaggagaggtcgtggttcagagaagccgagatttaccagaccgtgatgcttagaca cgaaaacattcttggttttattgctgctgataacaaagataacggtacatggacacaattatggttgatcacagattatc atgagaacggttcattgttcgactatttaaatagaacatcagtcacggtatctggtatgatacgtttagctttatccaca gcatgtggattagctcatctccacatggatattgtgggaacagaagtgcatactgggaagccagcaattgcgcacagaga cctcaaaagtaagaacatcctagtgagaagtaatgggacttgctgtatagcagatcttggtgagtactatggcatgatag gtgaaaataagttttggtga |
|
Protein
| Protein ID | pfu_aug2.0_350.1_00646.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_350.1_00646.t1 MIWVIFISNEDSVKEVFNEREISRELRDDNFGNIQNTTDERPFNKITLQDIVMTVRTTTKNSETRMKALFESWLPSAFDK SDYIYVFSDGEDQKVSNRVPVISLSASCNFCRWYCLFDDDMYLNVDNLVTLLRDYDYNGLWYIGKNDRETKPHYIPRQKY RNVTFWFHNRGSGICLSRGLFEKMKPIISEDGFAQLAPSIGLLDDLVLGFIINHILKVNPTHINLFHSQWEKMADIENLE KQITLGYKEANKNYLNVEGFSLKCYCQECENRTCTTDGLCLTSVSIDKKTGLNKYRYRCIEKKNTDLFPSGPELFCQSSI KKKFRSHQLCCNEEDFCNTKLTPTLAPPTTRPPEGRPDFQPRSTRLEFDTLELVALITGPVILVSIIFIVAFFAYRQFQQ KQQLRRVYLPAEQSRESMPFIQPGQNTDTIREMIYEYSGSGSGLPLLVQRTIARQIQLCEIIGKGRFGEVWRGRWRAESV AVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLITDYHENGSLFDYLNRTSVTVSGMIRLALST ACGLAHLHMDIVGTEVHTGKPAIAHRDLKSKNILVRSNGTCCIADLGEYYGMIGENKFW |
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| Protein ID | pfu_aug2.0_350.1_00646.t2 |
| Definition | - |
>pfu_aug2.0_350.1_00646.t2 MIWVIFISNEDSVKEVFNEREISRELRDDNFGNIQNTTDERPFNKITLQDIVMTVRTTTKNSETRMKALFESWLPSAFDK SDYIYVFSDGEDQKVSNRVPVISLSASCNFCRWYCLFDDDMYLNVDNLVTLLRDYDYNGLWYIGKNDRETKPHYIPRQKY RNVTFWFHNRGSGICLSRGLFEKMKPIISEDGFAQLAPSIGLLDDLVLGFIINHILKVNPTHINLFHSQWEKMADIENLE KQITLGYKEANKNYLNVEGFSLKCYCQECENRTCTTDGLCLTSVSIDKKTGLNKYRYRCYNFRGKFILPSGPAFCRSNYK QTESRIVCCKTEFCNKQTLPTLGYSKLSKNSSSEGRPDFQPRSTRLEFDTLELVALITGPVILVSIIFIVAFFAYRQFQQ KQQLRRVYLPAEQSRESMPFIQPGQNTDTIREMIYEYSGSGSGLPLLVQRTIARQIQLCEIIGKGRFGEVWRGRWRAESV AVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLITDYHENGSLFDYLNRTSVTVSGMIRLALST ACGLAHLHMDIVGTEVHTGKPAIAHRDLKSKNILVRSNGTCCIADLGEYYGMIGENKFW |
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