Gene
| Gene Model ID | pfu_aug2.0_3502.1_09160 |
|---|---|
| Locus | scaffold3502.1 : 1 ... 4535 : - |
| To GenomeBrowser | scaffold3502.1:1..4535 |
| Genes list of scaffold | scaffold3502.1 |
| Synonym | pfu_aug1.0_13020.1_03301 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerase iii subunit rpc2- partial | GO:0003677 GO:0003899 GO:0006351 GO:0032549 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3502.1_09160.t1 | 1 | 1 | RNA_pol_Rpb2_1 | 45 | 79 | 5.1e-06 | 25.5 | 1.5e-09 | 7.3e-06 | 25.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3502.1_09160.t1 | gi|260807868|ref|XP_002598730.1| | hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae] | 2.0e-25 |
| pfu_aug2.0_3502.1_09160.t1 | gi|736248684|ref|XP_010787343.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like, partial [Notothenia coriiceps] | 5.0e-25 |
| pfu_aug2.0_3502.1_09160.t1 | gi|676465227|ref|XP_009057176.1| | hypothetical protein LOTGIDRAFT_233244 [Lottia gigantea] | 3.0e-24 |
| pfu_aug2.0_3502.1_09160.t1 | gi|542263928|ref|XP_005466585.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like, partial [Oreochromis niloticus] | 4.0e-24 |
| pfu_aug2.0_3502.1_09160.t1 | gi|554847942|ref|XP_005934274.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Haplochromis burtoni] | 7.0e-24 |
Transcript
| Transcript ID | pfu_aug2.0_3502.1_09160.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3502.1_09160.t1 atggaaataaagttgaaacatccggggaaaaaaaatgaaaaaatagtgaaacattgtgtcagcatgcatgaacgcatggc tgactccacacaggacaaatggaaattgctgccagctttcctaaaggttaagggtttggtgaagcagcacattgactctt ttaactacttcattaatgttgagatcaaaagtatcatgaaagccaatgagaagatcctcagtgatgcagatccaaacttt tacatgaa |
|
Protein
| Protein ID | pfu_aug2.0_3502.1_09160.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3502.1_09160.t1 MEIKLKHPGKKNEKIVKHCVSMHERMADSTQDKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKSIMKANEKILSDADPNF YM |
|