Gene
| Gene Model ID | pfu_aug2.0_3503.1_12476 |
|---|---|
| Locus | scaffold3503.1 : 33516 ... 59620 : + |
| To GenomeBrowser | scaffold3503.1:33516..59620 |
| Genes list of scaffold | scaffold3503.1 |
| Synonym | pfu_aug1.0_7241.1_52916 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerases and iii subunit rpabc3 | GO:0000398 GO:0001054 GO:0001055 GO:0001056 GO:0003677 GO:0005665 GO:0005666 GO:0005736 GO:0005829 GO:0006283 GO:0006361 GO:0006362 GO:0006363 GO:0006367 GO:0006368 GO:0006370 GO:0006385 GO:0006386 GO:0032481 GO:0034587 GO:0035019 GO:0045087 GO:0045814 GO:0050434 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3503.1_12476.t1 | 1 | 1 | RNA_pol_Rpb8 | 7 | 146 | 0.0 | 207.7 | 0.0 | 0.0 | 207.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3503.1_12476.t1 | gi|556980147|ref|XP_005996821.1| | PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_3503.1_12476.t1 | gi|597786796|ref|XP_007256855.1| | PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like isoform X1 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_3503.1_12476.t1 | gi|551497638|ref|XP_005800373.1| | PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_3503.1_12476.t1 | gi|410921710|ref|XP_003974326.1| | PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_3503.1_12476.t1 | gi|62955177|ref|NP_001017600.1| | DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3503.1_12476.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3503.1_12476.t1 atggcgggggtgttgttcgaagatatttttgacgtaaaggacatcgatccagatgggaaaaagttcgacagggtatcaag actgttttgcgagtcggagtcgtttaaaatggacttgatattagatgtcaatacacagatttatcccatagatcttggag acaaattccgaatggttttagccaagaccctcagagaagatggcactccggatgacggagagtttaaccccactgatacc ggcccgtcacgagccgacagctttgaatacgtcatgtacggcaaagtgtaccgtatagaaggggacgacactgggccaga ctcgacaagactggccgcttatgtatcatatggtggacttttgatgcgtctccagggcgacgccaacaacttgcatggat tcgaggtcgattcgtacgtgtacttactcgtaaaaaagcttgctttctga |
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Protein
| Protein ID | pfu_aug2.0_3503.1_12476.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3503.1_12476.t1 MAGVLFEDIFDVKDIDPDGKKFDRVSRLFCESESFKMDLILDVNTQIYPIDLGDKFRMVLAKTLREDGTPDDGEFNPTDT GPSRADSFEYVMYGKVYRIEGDDTGPDSTRLAAYVSYGGLLMRLQGDANNLHGFEVDSYVYLLVKKLAF |
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