Gene
| Gene Model ID | pfu_aug2.0_3510.1_02421 |
|---|---|
| Locus | scaffold3510.1 : 33870 ... 56155 : - |
| To GenomeBrowser | scaffold3510.1:33870..56155 |
| Genes list of scaffold | scaffold3510.1 |
| Synonym | pfu_aug1.0_7982.1_67774 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dystroglycan isoform x3 | GO:0016020 GO:0044464 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3510.1_02421.t1 | 2 | 1 | DAG1 | 645 | 758 | 0.0 | 208.4 | 3.1e-20 | 6.6e-17 | 61.6 |
| pfu_aug2.0_3510.1_02421.t1 | 2 | 2 | DAG1 | 775 | 946 | 0.0 | 208.4 | 0.0 | 2.70451e-43 | 148.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3510.1_02421.t1 | gi|676433134|ref|XP_009046801.1| | hypothetical protein LOTGIDRAFT_224800 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3510.1_02421.t1 | gi|524881948|ref|XP_005097620.1| | PREDICTED: dystroglycan-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_3510.1_02421.t1 | gi|241842417|ref|XP_002415407.1| | dystroglycan, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_3510.1_02421.t1 | gi|505843610|ref|XP_004615302.1| | PREDICTED: dystroglycan [Sorex araneus] | 0.0 |
| pfu_aug2.0_3510.1_02421.t1 | gi|585684875|ref|XP_006892966.1| | PREDICTED: dystroglycan isoform X1 [Elephantulus edwardii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3510.1_02421.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3510.1_02421.t1 atgaaggaattaagatgcacacgcaatgaacgttccaacatggagacagacagtagaaaagaaaggtgtacgatgtgttc acggaatctgtatacacacgtggataatatgggaccgtcacacacattccgtcttagttctataggatatcttgtatttt gtgtgatactgtgtgtggttctacatacagccaccgcccagaacctacagatagacgcctgggagacgggcaactcacta caagacaatggggaggggccggggagggcgtcacccgtcaccttaatgtgggggatcgctgacacctcagccaccgtggg caaaatgttcaactacgccattccaagtgacgcattcaaagggactgttctcaaatacaaggtatccgaagcaggaaagg acactttaccaggatggttgatgtttgacgaaaagacaaactcgctcaagggcatcgccactccagatgacatgaagcat cactatatcgaggtcattgctcaaggtcaaggtcgatcaaaagccaaagatgtgttctccgtcacagtatctgccgaaac acccagccaccatgtgccttcacccgtaaccaacagtaacggtaaaccacaagtcgtcaaatgcaaagctgaacaaccgg aaaccactgttactatagtactggacagcgacatgaaggagatggcggtatctgaccgtttacgtaccattcagaaattc caagactattttagcttagcctctgacatgttaaaactgttacctctcggatctagacctatgtttgacagctctgctat ggtagctggacctggggataagaagaagccggagacgcctggaatgacgatgtcctggttggtgggatgtgggaaagtgg agggagatcacatgaaaatcttacacaaaatccaagccacatctgaagatggtaccctgcgtgataatgtaggtcacgct gtgattggctggcacgtgacctacacagccaatcacctgaaaccgcgacgaaaaagggcggcaatccgtgccacggcgac tcccgtacaaacacctagcccaccaactgacgtgccgatcaaggttgttactgacactgatatcaaaccaacggcaacag aacaaatgtcaaggtcagtaccaagtatggaatctcccgcttttacaacatctcagatgataaaaccaactaaaactgtt accatgccgtcagcaagtcccacaccacctgaaccaaccacgcctatgatgacaaggttacctaccctaacgccaaaacc aacaatgaaaccgaaagtaacaacagaagctatccgtccgtcagagggtccagaggaaccggcggtagtagaccagacga caactcaaattttaccaactcgtacctacgttgttaccgatgcacctacatctattgttcctacaacaccaaagaaagaa gttacagaaaaaccagtaactgatcctgtcacaaagaaaccatctaccgattcgccctctataaattgtccagacgacaa tcaaccgcgacgaccaatagtaaagggaaccacgaaggtaatgttgtttccggtgggtaaagagacaatgtacagcatac caaacgatctgtttatggactgcttcacaccagagggaacaattggattacgtctggttttactcaacggcaccggtaca ttaccaagaaatttctggctctctttgagcaggaggaccgaagaatggaagctgataggattcccactctcgcggcatct gggttccacgagtctcacgcttgctgcagaaaaccaatttgaaataggtccagcatttcacacgattaaagttggagtgg tacccaatcaggcaataagtggtgaaccttcacataaagtaagtctcacgtttgaaggaaatttcaataaattcggacct aagaaaatgaaggacctaacaaggaaagttgccagtgtttttagtgacaagaaggatgctagtgatcagattactgtctt ggacgtatctgctggatctatagtatactcgtggactaacaacacacttccgacaaacaggtgcccggcgaaagacgtca ccgaaatgatgaaaaggttagttaacgatcaaggaatgctaaaaaagtcagctaaaaggaaactagagccgttcgttctt cacgaggttgaatcaaatccgctcggtgtttgtgaacaggatcctaacttcccgcttgtaaatacaaaatacctacctac tccaactccaaagcctaacgaccccgacacaacaatgaaacccaagccaacgatggagcctcctacacccaaaccaacta taaaagtcacagaggcaccaacaacaaaggaagactcggcactaaacgagaaagctgcacagggaacaagtgacgacgag atctggatcaccactgtggtacctgctgtcgtggtggtcgccattttattaattgccctgataatcgcatgtgtattata caggaaacaaaggaaaggcaagatgtcgttagaggaccaacatacctttgtaaacaagggcgtacctgtgatattacctg acgaatatgacgaaaaacctaatgacgcaacaaaacctcttataatggacgacgaaaaaccgcccatgcctccaccagag tacacgcgcgcgtcaagtgaaagttcgcggtcgtctcacgaaagacacgaagaacaagaggaagttgaaatggacgaaac ggatgtgacgtcaccgctgtaccgaccgcctcccccagtgcaatcaacaggaagtaacaaacagcctcgtcctcatattc caccagcgtataagaaccctacaccttatgtgccaccttaa |
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Protein
| Protein ID | pfu_aug2.0_3510.1_02421.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3510.1_02421.t1 MKELRCTRNERSNMETDSRKERCTMCSRNLYTHVDNMGPSHTFRLSSIGYLVFCVILCVVLHTATAQNLQIDAWETGNSL QDNGEGPGRASPVTLMWGIADTSATVGKMFNYAIPSDAFKGTVLKYKVSEAGKDTLPGWLMFDEKTNSLKGIATPDDMKH HYIEVIAQGQGRSKAKDVFSVTVSAETPSHHVPSPVTNSNGKPQVVKCKAEQPETTVTIVLDSDMKEMAVSDRLRTIQKF QDYFSLASDMLKLLPLGSRPMFDSSAMVAGPGDKKKPETPGMTMSWLVGCGKVEGDHMKILHKIQATSEDGTLRDNVGHA VIGWHVTYTANHLKPRRKRAAIRATATPVQTPSPPTDVPIKVVTDTDIKPTATEQMSRSVPSMESPAFTTSQMIKPTKTV TMPSASPTPPEPTTPMMTRLPTLTPKPTMKPKVTTEAIRPSEGPEEPAVVDQTTTQILPTRTYVVTDAPTSIVPTTPKKE VTEKPVTDPVTKKPSTDSPSINCPDDNQPRRPIVKGTTKVMLFPVGKETMYSIPNDLFMDCFTPEGTIGLRLVLLNGTGT LPRNFWLSLSRRTEEWKLIGFPLSRHLGSTSLTLAAENQFEIGPAFHTIKVGVVPNQAISGEPSHKVSLTFEGNFNKFGP KKMKDLTRKVASVFSDKKDASDQITVLDVSAGSIVYSWTNNTLPTNRCPAKDVTEMMKRLVNDQGMLKKSAKRKLEPFVL HEVESNPLGVCEQDPNFPLVNTKYLPTPTPKPNDPDTTMKPKPTMEPPTPKPTIKVTEAPTTKEDSALNEKAAQGTSDDE IWITTVVPAVVVVAILLIALIIACVLYRKQRKGKMSLEDQHTFVNKGVPVILPDEYDEKPNDATKPLIMDDEKPPMPPPE YTRASSESSRSSHERHEEQEEVEMDETDVTSPLYRPPPPVQSTGSNKQPRPHIPPAYKNPTPYVPP |
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