Gene
| Gene Model ID | pfu_aug2.0_3521.1_05845 |
|---|---|
| Locus | scaffold3521.1 : 43747 ... 60380 : - |
| To GenomeBrowser | scaffold3521.1:43747..60380 |
| Genes list of scaffold | scaffold3521.1 |
| Synonym | pfu_aug1.0_30871.1_69989 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3521.1_05845.t1 | 3 | 1 | IBR | 213 | 226 | 3.5e-06 | 26.7 | 1.0 | 15000.0 | -9.0 |
| pfu_aug2.0_3521.1_05845.t1 | 3 | 2 | IBR | 266 | 334 | 3.5e-06 | 26.7 | 2.3e-10 | 3.5e-06 | 26.7 |
| pfu_aug2.0_3521.1_05845.t1 | 3 | 3 | IBR | 355 | 365 | 3.5e-06 | 26.7 | 0.05 | 750.0 | 0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3521.1_05845.t1 | gi|524912183|ref|XP_005110944.1| | PREDICTED: uncharacterized protein LOC101861007 isoform X1 [Aplysia californica] | 2.0e-40 |
| pfu_aug2.0_3521.1_05845.t1 | gi|241114457|ref|XP_002400198.1| | IBR domain containing protein [Ixodes scapularis] | 1.0e-33 |
| pfu_aug2.0_3521.1_05845.t1 | gi|573876470|ref|XP_006626510.1| | PREDICTED: probable E3 ubiquitin-protein ligase RNF217-like [Lepisosteus oculatus] | 7.0e-31 |
| pfu_aug2.0_3521.1_05845.t1 | gi|543345785|ref|XP_005518680.1| | PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Pseudopodoces humilis] | 2.0e-29 |
| pfu_aug2.0_3521.1_05845.t1 | gi|611998156|ref|XP_007484568.1| | PREDICTED: probable E3 ubiquitin-protein ligase RNF217 isoform X2 [Monodelphis domestica] | 3.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_3521.1_05845.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3521.1_05845.t1 gtgttagctgttaataattattttccggcaatggaaagaaccagtgaaggaggagatatgatgacagaagaagcaagtag aagtgatattacgtcagaggaaaaaggtctatccattaacagtcataaagtcaatgccgtgagtgacatcaaagactctc gcagaagaaatttgtcattgaaatttccgagaaaattagaaccaatgcatgtactcaggtcagacgtacaggatctatca cttcaaggtatagaaagtgaaaaatctaagagaaacagctccaggaagaattctaaatgtagaaaacagaaaaaatctcc cattgtgttacaggtaccagaaacggactctgatgattctagccaatcttcagtttcagacgtagatgaaacaaccggag gaatttcaacgtatgacataagtgatgaggaagatttcagttggtacatggaggatttgatggatgcaaacattcctgga atggaggaattggctttcggaggatatgaggatggtgaaccagatgaacctgttgaagaaccaaagaaggagattattta tccgtacggtaaccttgtaccaggagagagagaatgtgaaatatgtttagagacagacgttggtagacggtacagaaaat gctgccgtatctgtgtttgcgatgaatgtatgaacgcgtactttgcctgtcaggttgaaaacggaattgtaaggataggc tgtgtaagcgatcgatgtgatcaacatgctcatgttgaggagataatgtgtcgactgcctgcatgtttgaaaaataagta ctacaaattcctggtagatgccaacaatgacccctatgtcaaaacttgtccgaggtgtaactacatacatcatgtcaaca aagaagatatgaatgctcagagtaaacagttgaaaaagtttggatattcagtgtgttgtccagactgtaaacttgtttgg tgtttcccctgtcatgctccggaacataaggaaatcaaatgtaaggaattccgtaaaggagataagcttgtgaagacatg ggctaaggagagaaaatatggacagaaaaatgctgaaaaatgccctaaatgcaagataaatttgcagcatggaccagaca tgcacgtttcaggagcaaagctaataggtgccataggattaggtgctattgtcgtaggtgcaggtgccttgttcctagca ctcagtcctgtttgggcacctatataccttggacgtaggatacatctacggagaagggcagaaaaacgtagaaagaaatt ttccagtaggtataagaaagcagctgctagcagtttgagaaggggacagagagatttcagggatattgatgatattgtag cagcagacattgcagaaatgatgaggcaatatttggaagagaaagccaatcaaaatttgcctgacttgattggacaagtt ggaaaacctgtaatcagactgagtgatagtgaaatgacctctagtcaatccagtactgattcatccttgacctctgaccc aagtcatgaagacgaagtactaaatgtcagagttgaaggtcacagtggagggtcagaaaacgtctcagtgtggattcatt ctcagcacaaggagaaaaagaagctgcctagtcaaaaatcaaaagatgatgctgtgacatcattagaggtcaaggacaaa gaggacaaggagattgtgatatctgactgtgataaagacgttcaaaccactgccaagatatctaaaactgccactgattc tgatgctatagttcttcatgttaaaaccaccagtaaaagttccaaaaaagatccaaaagttgttccacgtgaagttgtga ctaattctgaagctgatgcatctaacagtccagattttgtcacaggtgcttctgaaaataaaaaatcaacgaatggatgt tttgtcgctttgtttggaagaaaactcccaactttgtcggaaaatgatgcaggacataaccactccacttcagaagaatc aaatgcacttcaaacaaactctagaaattctgatgcggacggccaactagaaagtaggacagataaatataaggctattc ctgatgttctcaaatcgtcactggaggctgatcaaccacccatagttgacgctgaatactttcctcaatcagaggatgaa gtatccactgagggtaacgtagatgcatattatggagtaattgctgaagagagtatagaaacatcgttatga |
|
Protein
| Protein ID | pfu_aug2.0_3521.1_05845.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3521.1_05845.t1 VLAVNNYFPAMERTSEGGDMMTEEASRSDITSEEKGLSINSHKVNAVSDIKDSRRRNLSLKFPRKLEPMHVLRSDVQDLS LQGIESEKSKRNSSRKNSKCRKQKKSPIVLQVPETDSDDSSQSSVSDVDETTGGISTYDISDEEDFSWYMEDLMDANIPG MEELAFGGYEDGEPDEPVEEPKKEIIYPYGNLVPGERECEICLETDVGRRYRKCCRICVCDECMNAYFACQVENGIVRIG CVSDRCDQHAHVEEIMCRLPACLKNKYYKFLVDANNDPYVKTCPRCNYIHHVNKEDMNAQSKQLKKFGYSVCCPDCKLVW CFPCHAPEHKEIKCKEFRKGDKLVKTWAKERKYGQKNAEKCPKCKINLQHGPDMHVSGAKLIGAIGLGAIVVGAGALFLA LSPVWAPIYLGRRIHLRRRAEKRRKKFSSRYKKAAASSLRRGQRDFRDIDDIVAADIAEMMRQYLEEKANQNLPDLIGQV GKPVIRLSDSEMTSSQSSTDSSLTSDPSHEDEVLNVRVEGHSGGSENVSVWIHSQHKEKKKLPSQKSKDDAVTSLEVKDK EDKEIVISDCDKDVQTTAKISKTATDSDAIVLHVKTTSKSSKKDPKVVPREVVTNSEADASNSPDFVTGASENKKSTNGC FVALFGRKLPTLSENDAGHNHSTSEESNALQTNSRNSDADGQLESRTDKYKAIPDVLKSSLEADQPPIVDAEYFPQSEDE VSTEGNVDAYYGVIAEESIETSL |
|