Gene
| Gene Model ID | pfu_aug2.0_353.1_10645 |
|---|---|
| Locus | scaffold353.1 : 1 ... 5226 : + |
| To GenomeBrowser | scaffold353.1:1..5226 |
| Genes list of scaffold | scaffold353.1 |
| Synonym | pfu_aug1.0_19815.1_18671 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_353.1_10645.t1 | 2 | 1 | Collagen | 80 | 138 | 8.9e-13 | 47.5 | 2.3e-11 | 1.7e-07 | 30.6 |
| pfu_aug2.0_353.1_10645.t1 | 2 | 2 | Collagen | 125 | 183 | 8.9e-13 | 47.5 | 1.1e-08 | 8.5e-05 | 22.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_353.1_10645.t1 | gi|700376196|ref|XP_009942541.1| | PREDICTED: macrophage receptor MARCO [Opisthocomus hoazin] | 2.0e-11 |
| pfu_aug2.0_353.1_10645.t1 | gi|697478180|ref|XP_009671538.1| | PREDICTED: collagen alpha-1(XXIV) chain [Struthio camelus australis] | 2.0e-11 |
| pfu_aug2.0_353.1_10645.t1 | gi|52842850|ref|YP_096649.1| | 4.0e-11 | |
| pfu_aug2.0_353.1_10645.t1 | gi|617439427|ref|XP_007564544.1| | PREDICTED: collagen alpha-1(VII) chain-like [Poecilia formosa] | 1.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_353.1_10645.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_353.1_10645.t1 atagacgtccgacatttggatacggttgtctggtccatggacaaacttggttttctggatctcagtatgacgccatgcgt cacattcaggcgtcattctgatccgttataccatacccagtccttactgtaccgctccgacagatctgtactcctctctg tacaagaagaagggaccgccacaccgttccaagtttctatggatttcaacgtgcgggccaaaactgaaccctacctggga acagagggggcacaaggtatcacggggatctcaggagtaagaggcgggtacggtgacacaggttacgtaggtcttcaggg accccgtggacagcgcggtgaaaagggacccatcggatcccagggaagtataggacctcaaggacaaacaggatttaacg gaggtgctggagagagaggcgaccagggtacctccggaggagataacagtccaggagtcccaggtgacacgggagaagta ggtgacactggcttcgtaggtaaaactggtgatggtggttttagtggtgcggatggagatgttggtcccgagggtacagt ggatgtagatgaatgtggaggttttatatgcgatgctgaacaggtctgtgtcaatgtagaggggcgacacgaatgtctgg gtccgtacaccgttagaggccttgtggggaaagtggcgagtgcacagacaatggacggactcctgtccactggtactatg acggggattactgcgtggatgatcattctctccatcgttctcatcatcgaaatcctcctcttcttatacatcgtatcccg agagaaccgcaccctttaccgtccgatgcaagtgcttatgccagcacccgaggaacccaaggtgtatgtggcagatagag atccagggccgtcaacgaagcaccttagcctgcccaaaataagttacatatcctacccaagcgaaaagaggccgttggcg atgttagacagtgtaccgtacggtcaagtacagaaacttagactgtcacgctctaattcattattctga |
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Protein
| Protein ID | pfu_aug2.0_353.1_10645.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_353.1_10645.t1 IDVRHLDTVVWSMDKLGFLDLSMTPCVTFRRHSDPLYHTQSLLYRSDRSVLLSVQEEGTATPFQVSMDFNVRAKTEPYLG TEGAQGITGISGVRGGYGDTGYVGLQGPRGQRGEKGPIGSQGSIGPQGQTGFNGGAGERGDQGTSGGDNSPGVPGDTGEV GDTGFVGKTGDGGFSGADGDVGPEGTVDVDECGGFICDAEQVCVNVEGRHECLGPYTVRGLVGKVASAQTMDGLLSTGTM TGITAWMIILSIVLIIEILLFLYIVSRENRTLYRPMQVLMPAPEEPKVYVADRDPGPSTKHLSLPKISYISYPSEKRPLA MLDSVPYGQVQKLRLSRSNSLF |
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