Gene
| Gene Model ID | pfu_aug2.0_356.1_20660 |
|---|---|
| Locus | scaffold356.1 : 248292 ... 265199 : + |
| To GenomeBrowser | scaffold356.1:248292..265199 |
| Genes list of scaffold | scaffold356.1 |
| Synonym | pfu_aug1.0_6917.1_60151 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ubiquitin carboxyl-terminal hydrolase 48 isoform x1 | GO:0016787 GO:0051603 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_356.1_20660.t1 | 2 | 1 | UCH | 49 | 388 | 0.0 | 169.3 | 0.0 | 0.0 | 169.3 |
| pfu_aug2.0_356.1_20660.t1 | 3 | 1 | UCH_1 | 49 | 346 | 1.2e-33 | 116.7 | 4.2e-37 | 1.2e-33 | 116.7 |
| pfu_aug2.0_356.1_20660.t1 | 3 | 2 | UCH_1 | 445 | 473 | 1.2e-33 | 116.7 | 2.9 | 8700.0 | -4.2 |
| pfu_aug2.0_356.1_20660.t1 | 2 | 2 | UCH | 581 | 581 | 0.0 | 169.3 | 5.0 | 15000.0 | -8.6 |
| pfu_aug2.0_356.1_20660.t1 | 3 | 3 | UCH_1 | 589 | 898 | 1.2e-33 | 116.7 | 0.009 | 27.0 | 4.0 |
| pfu_aug2.0_356.1_20660.t1 | 1 | 1 | ubiquitin | 978 | 1034 | 1.2e-07 | 31.0 | 9.4e-11 | 2.8e-07 | 29.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_356.1_20660.t1 | gi|326671953|ref|XP_002667675.2| | PREDICTED: ubiquitin carboxyl-terminal hydrolase 48 isoform X1 [Danio rerio] | 0.0 |
| pfu_aug2.0_356.1_20660.t1 | gi|548498723|ref|XP_005749940.1| | PREDICTED: ubiquitin carboxyl-terminal hydrolase 48-like isoform X3 [Pundamilia nyererei] | 0.0 |
| pfu_aug2.0_356.1_20660.t1 | gi|548498709|ref|XP_005749938.1| | PREDICTED: ubiquitin carboxyl-terminal hydrolase 48-like isoform X1 [Pundamilia nyererei] | 0.0 |
| pfu_aug2.0_356.1_20660.t1 | gi|499041733|ref|XP_004571483.1| | PREDICTED: ubiquitin carboxyl-terminal hydrolase 48 isoform X1 [Maylandia zebra] | 0.0 |
| pfu_aug2.0_356.1_20660.t1 | gi|548498730|ref|XP_005749941.1| | PREDICTED: ubiquitin carboxyl-terminal hydrolase 48-like isoform X4 [Pundamilia nyererei] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_356.1_20660.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_356.1_20660.t1 atgcatttcaagcagcacgttttggcgtactctcgtgttcactgtacaaactcaggagagaaggtgtggtttggggaaat cagagaggacagttggcacgacattgaagacccaaatgaagagagacgtacagaaagggcatttgtagggttgaagaacc taggagcaacttgttatgtcaatacttttcttcagttatggtttcatagtccagagataaggagagccatctacaaatat agagagactgatattgctgcagattataacatcttagagggatggaagccaagcagcataggtgggcacttacaagtcat atttgcacttttagacttttcagagagggcatacataagtcctcaggaatttataaatcacttgggactggatgccgcct tgcagcaggatgctcaggaattctccaagttattcctgtccttgcttgaggattcattatcacagcagaaagatccatct gtccgcaatgttatccagtctcagttctgtggtgaatacgcctatgtgacaacgtgcaaaaattgtggaaacgcatctca tcgtccgtctaagttttatgaacttgacctgcatatcaaaggtcacaaaacgttagaagattcaatcacagaatttttgc aagaggaaaaattggatggcaacaataagtacatgtgttcacactgttgtagcaagcaagacgcagcacgggccattcag ttgaaacaacttcctcctgtgttaaatattcagcttctccggtttgttttcgatatgaaaagtggacagaagagaaagct gaatagcttcatacaatttccagaggtcctagacatgagccctttcctacaaaggaaagagactgggagtgtaaatggtg aaacaagtcgggaaacggatgacaactcaatgtcagccaagtataacctacgagccgtgcttattcacagagggccatct gcctatagcggtcattatatagcacacatcaaggacatgaagcaagggccttggtaccgatttaatgacgaggaaatcaa gaaaatgaagggagccagtcttcacctgggtactgaggaagatttggaggagaacgctaataaacagaaaggaagggtgc cgaaggggtaccattcatcaaggaatgcttatatgttggtctacacaaaagccagtggtaaagttgacgaaaaagagatt acgtctgagaattttgtgttgaatgacaaggaaacgtcagataccgacaaaaagatggagatagacaaccaggagagtat gacgaacaacactaacggggaaaatctgtccgagaaaaatcttttaccagaatatgttcataaatatgttgaagaagaca acaataagtttgagatgtggattgcagaaatgataatgatgcgagatcagaacatcgagaatggaaaagaaaagcaagag gaagtaaaaacaaattttaagaaattgtttgtggacagtagtaagcaagctgagggggattttgaatggatttgtccaaa atggatttcaaagtggcttgcggaaccgtcaaaagcaccagcaattgataactcaaattatctctgtccacacaagaaac ttgacccagattgtgcggtaaagttgaaatgcgtgagtgtaaaaggtgcagacattctctatgacaagtattctggaggt ccacgattacctggtgaaaagtcaacttgtttgatttgtgtgggaaatcgatgtagaattatacgtacaaaacaaaagat gcatgaggatgacaagatgtttagttgcatgaaaaaggacgtgaatccaatggaagaaaaatgctactgggtcggaaaat cttcgatgcgaagttggaagaggctagttcttgagcagattgaagaaatggcagcagcggagagaaagcagcaaaactac aatagacatacaatgtccgaaagtgaactggaagatcaggatatggacaaagatgagaaagaaattaacggagatctcac tgactgtccgcaggaaaggcgagatgctgaaaattacaatcttaatgaggagctcagtagtaaaaatgagagtatggagc ttgttttgcagttcaatgaagatcttttgtgtcagtatcatggagatttagatccagatgtatcctgtcggaaacttatt cctgaaaaaatatggaatcggctgaaagaatatttcccgaattgtccggagtatgaaagtgatgctccagtttgttcaaa gtgctgcacattgattcaagtggatcaagaaaataaagatgtgaataaacgactggcagcagcacagaaacaggtactgg gagatttatttaatgacagaaaacgtccgcaaaagttcgttcttggtcaggaattgaatgtcgttagtgcttcatttgta gaagaatggcggaaattcatacgggatcctttgaagaattctccagtgtcagaagtgtcaaacattatactgctttgtaa acatgacgggtatgtgcacccaccgacggaaaatccccctgagctttcaaacacaagcgttgtttacgtttggccgacgg aatgggatattatctgtcaaaacttcatcgtagattttgaaatttctgtagtgccatatcaagctgaagacagactacaa tttgcaactttacctgacatttgtaaagattgtgtgaatgcaagaaacaatgaaatggaaatggcaaaatacgaatacaa agacgctactgtttacgtcagaaaaattccaaaggagtcaaagtcaaagaacaacagtatttcggagggcaattcgagca aagaggacgatccagagtatatgcagttaggaaatttatcagatctcgaggaaccaccagacaaaatgttcaaacttgac aacggagttcgtcgcaaaagttccagacatagaaaggtcagaggtgaaaaggaggtgaaggtctcatcaacacagacttt aaaagacttaaaacttcaaataatgaagctattttcagttcctccatttgatcagaacttgttcttggatggcattgcac tgaaagacaatgcaacaacacttagtgaactgagggtagctccaggggctataattctgcttcaagcagatgaacctgag gaggatcctggggtgttacaggattggatccaagtttcaggtgggccagaagaaggtttcaagggtacagggcttctcag ccattcttga |
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Protein
| Protein ID | pfu_aug2.0_356.1_20660.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_356.1_20660.t1 MHFKQHVLAYSRVHCTNSGEKVWFGEIREDSWHDIEDPNEERRTERAFVGLKNLGATCYVNTFLQLWFHSPEIRRAIYKY RETDIAADYNILEGWKPSSIGGHLQVIFALLDFSERAYISPQEFINHLGLDAALQQDAQEFSKLFLSLLEDSLSQQKDPS VRNVIQSQFCGEYAYVTTCKNCGNASHRPSKFYELDLHIKGHKTLEDSITEFLQEEKLDGNNKYMCSHCCSKQDAARAIQ LKQLPPVLNIQLLRFVFDMKSGQKRKLNSFIQFPEVLDMSPFLQRKETGSVNGETSRETDDNSMSAKYNLRAVLIHRGPS AYSGHYIAHIKDMKQGPWYRFNDEEIKKMKGASLHLGTEEDLEENANKQKGRVPKGYHSSRNAYMLVYTKASGKVDEKEI TSENFVLNDKETSDTDKKMEIDNQESMTNNTNGENLSEKNLLPEYVHKYVEEDNNKFEMWIAEMIMMRDQNIENGKEKQE EVKTNFKKLFVDSSKQAEGDFEWICPKWISKWLAEPSKAPAIDNSNYLCPHKKLDPDCAVKLKCVSVKGADILYDKYSGG PRLPGEKSTCLICVGNRCRIIRTKQKMHEDDKMFSCMKKDVNPMEEKCYWVGKSSMRSWKRLVLEQIEEMAAAERKQQNY NRHTMSESELEDQDMDKDEKEINGDLTDCPQERRDAENYNLNEELSSKNESMELVLQFNEDLLCQYHGDLDPDVSCRKLI PEKIWNRLKEYFPNCPEYESDAPVCSKCCTLIQVDQENKDVNKRLAAAQKQVLGDLFNDRKRPQKFVLGQELNVVSASFV EEWRKFIRDPLKNSPVSEVSNIILLCKHDGYVHPPTENPPELSNTSVVYVWPTEWDIICQNFIVDFEISVVPYQAEDRLQ FATLPDICKDCVNARNNEMEMAKYEYKDATVYVRKIPKESKSKNNSISEGNSSKEDDPEYMQLGNLSDLEEPPDKMFKLD NGVRRKSSRHRKVRGEKEVKVSSTQTLKDLKLQIMKLFSVPPFDQNLFLDGIALKDNATTLSELRVAPGAIILLQADEPE EDPGVLQDWIQVSGGPEEGFKGTGLLSHS |
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