Gene
Gene Model ID | pfu_aug2.0_357.1_23919 |
---|---|
Locus | scaffold357.1 : 93936 ... 105326 : + |
To GenomeBrowser | scaffold357.1:93936..105326 |
Genes list of scaffold | scaffold357.1 |
Synonym | pfu_aug1.0_27375.1_04572 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
caprin2 protein | GO:0090263 GO:2000055 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_357.1_23919.t1 | 1 | 1 | C1q | 41 | 165 | 6.3e-27 | 94.0 | 5.4e-31 | 8.0e-27 | 93.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_357.1_23919.t1 | gi|61651702|ref|NP_001013291.1| | caprin-2 [Danio rerio] | 1.0e-14 |
pfu_aug2.0_357.1_23919.t1 | gi|688547626|ref|XP_009298535.1| | PREDICTED: caprin-2 isoform X3 [Danio rerio] | 1.0e-14 |
Transcript
Transcript ID | pfu_aug2.0_357.1_23919.t1 |
---|---|
Definition | - |
>pfu_aug2.0_357.1_23919.t1 atgaaaggatacatttacatcgccttattcttagtagtgcagggaatttatgcaaaagaaatacgaggaattcccaattt cttccctgcagtacgagtagcacatacagataaatatgtagcattttctgtcggtctaacgcacaacctgaactattcat ctgccgtcaacataacgtacgacaaggttttcctcaacctaggagatggttacgatataaatacaggaattttcacgtgc cctcacgcgggaacgtacgcttttctgattcatggattatcccagagtgtctcacagttgaaccttgacttgtaccggaa caacgattacattgtgagtgcctatgcacatgctcgaaatgattacgcttccgcccatcaagctgttgtactgaaactat atgaatttgatgaagtgaacataagaggcaggggagtcaattatatgttcggtcagcgtcgggagatatactccacgttc tcgggatttattgtcgttccggatgaaggtcgcaccgctatacagacaaccacaccaccaaacggcatcattcttggctg a |
Protein
Protein ID | pfu_aug2.0_357.1_23919.t1 |
---|---|
Definition | - |
>pfu_aug2.0_357.1_23919.t1 MKGYIYIALFLVVQGIYAKEIRGIPNFFPAVRVAHTDKYVAFSVGLTHNLNYSSAVNITYDKVFLNLGDGYDINTGIFTC PHAGTYAFLIHGLSQSVSQLNLDLYRNNDYIVSAYAHARNDYASAHQAVVLKLYEFDEVNIRGRGVNYMFGQRREIYSTF SGFIVVPDEGRTAIQTTTPPNGIILG |