Gene
| Gene Model ID | pfu_aug2.0_357.1_23919 |
|---|---|
| Locus | scaffold357.1 : 93936 ... 105326 : + |
| To GenomeBrowser | scaffold357.1:93936..105326 |
| Genes list of scaffold | scaffold357.1 |
| Synonym | pfu_aug1.0_27375.1_04572 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| caprin2 protein | GO:0090263 GO:2000055 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_357.1_23919.t1 | 1 | 1 | C1q | 41 | 165 | 6.3e-27 | 94.0 | 5.4e-31 | 8.0e-27 | 93.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_357.1_23919.t1 | gi|61651702|ref|NP_001013291.1| | caprin-2 [Danio rerio] | 1.0e-14 |
| pfu_aug2.0_357.1_23919.t1 | gi|688547626|ref|XP_009298535.1| | PREDICTED: caprin-2 isoform X3 [Danio rerio] | 1.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_357.1_23919.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_357.1_23919.t1 atgaaaggatacatttacatcgccttattcttagtagtgcagggaatttatgcaaaagaaatacgaggaattcccaattt cttccctgcagtacgagtagcacatacagataaatatgtagcattttctgtcggtctaacgcacaacctgaactattcat ctgccgtcaacataacgtacgacaaggttttcctcaacctaggagatggttacgatataaatacaggaattttcacgtgc cctcacgcgggaacgtacgcttttctgattcatggattatcccagagtgtctcacagttgaaccttgacttgtaccggaa caacgattacattgtgagtgcctatgcacatgctcgaaatgattacgcttccgcccatcaagctgttgtactgaaactat atgaatttgatgaagtgaacataagaggcaggggagtcaattatatgttcggtcagcgtcgggagatatactccacgttc tcgggatttattgtcgttccggatgaaggtcgcaccgctatacagacaaccacaccaccaaacggcatcattcttggctg a |
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Protein
| Protein ID | pfu_aug2.0_357.1_23919.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_357.1_23919.t1 MKGYIYIALFLVVQGIYAKEIRGIPNFFPAVRVAHTDKYVAFSVGLTHNLNYSSAVNITYDKVFLNLGDGYDINTGIFTC PHAGTYAFLIHGLSQSVSQLNLDLYRNNDYIVSAYAHARNDYASAHQAVVLKLYEFDEVNIRGRGVNYMFGQRREIYSTF SGFIVVPDEGRTAIQTTTPPNGIILG |
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