Gene
| Gene Model ID | pfu_aug2.0_358.1_27292 |
|---|---|
| Locus | scaffold358.1 : 272228 ... 292319 : - |
| To GenomeBrowser | scaffold358.1:272228..292319 |
| Genes list of scaffold | scaffold358.1 |
| Synonym | pfu_aug1.0_3174.1_30363 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_358.1_27292.t1 | 1 | 1 | zf-RING_5 | 23 | 62 | 2.7e-06 | 26.9 | 5.0e-09 | 6.2e-06 | 25.8 |
| pfu_aug2.0_358.1_27292.t1 | 1 | 1 | zf-CCCH | 437 | 462 | 1.4e-08 | 34.2 | 2.6e-11 | 3.2e-08 | 33.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_358.1_27292.t1 | gi|57997172|emb|CAI46182.1| | hypothetical protein [Homo sapiens] | 0.0 |
| pfu_aug2.0_358.1_27292.t1 | gi|700419387|ref|XP_009947831.1| | PREDICTED: roquin-2 [Leptosomus discolor] | 0.0 |
| pfu_aug2.0_358.1_27292.t1 | gi|674038283|ref|XP_008824580.1| | PREDICTED: roquin-2 [Nannospalax galili] | 0.0 |
| pfu_aug2.0_358.1_27292.t1 | gi|512975190|ref|XP_004849673.1| | PREDICTED: roquin-2 [Heterocephalus glaber] | 0.0 |
| pfu_aug2.0_358.1_27292.t1 | gi|27881691|gb|AAH44642.1| | RC3H2 protein [Homo sapiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_358.1_27292.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_358.1_27292.t1 atgcatacctctggagctcaaccaatcagcatgccagcccagactttccagtggacagagtatttgtcatgtcaggtttg ttacaatattttcaatgaaaagggctaccttcctgtcagcttggcatgtggacataccgtttgtagaacctgccttttcc gactaccgcagaagaaatgtccctttgatcagaatcccattatgaaggatgtagaagagctgccagtaaactatgcctta ttacagctagtgggcgcagccataccagataacgaggaaacgaaagctctgacaacagcagaaaactcacagtactacca gtcaactaaacaatgtattgaagaattggctttatacctgaaacctatgtctgagactaattcaaacagtaactctgtcc aagctgtgactactgccccctccataacccaggccagtccaacactgggagccatccttagtcgaccaatgcagaaaaaa ctactcactctggtaaactgtcaacttgtagaagaggaaggacgttccagggctgtccgggcagcgagatcactagggga gagaactgtcacagaactgatattacagcatcagaatcctcagcagttgtctacaaatctatgggcagcagtgcgagcta gagggtgtcagtttctaggtcctgctatgcaagaggaagtactaaaattgatactgttagcattagaggatggttctcag ctgtccagaaaggttctagtgttatttgtggtacagagactagagaaacattatccacaagcgtctaaaacagccatagg tcatgtggtacaactcttgtacagagcttcatgcttcaaggttacaaagagagaagaagaatcatctctgatgcaattga aggaggaatttagaatatatgaagctttgagacgagaacatgattcccagattgtacagatagccatggaatctggcttg agaattgcccctgaccaatggtcctccttattatatggggacacagcctacaagtcccatatgcagtcaatcattgataa gcttcagacccctcagtcctttgctcaaagcattaatgaacttgtggtagctctccagagaacagtggatccctgtaatc tacagttgctcaggccacatctagatttccttgcttctgtggacccaaacccagattccatgtcaccatcttgggaacat gttgaggctgtgataaaggcagctaagtttgtcgtgaagggtttagtggagtttgtacagagtaatggccagagaaagag tgaagcaccgctggccatgaacatgcgatataaaactagtttatgtcgagatctcttccagaaaggtcactgcccaagag ggtcaagctgcacatttgcacattctcatgaggaacttgaaaggtatagagcccggatacgtaaagctggtaaaaatgta gccttatcatgtgtaacagcaaaactgacaccatcagagagggctgaacttgagcatgtcactaaagctactgatgaaaa attagcagctgcccatagcaagtcaactaaatctgggatcgatactgttgcaaatgaaactagggccattgttactccta gtgccacgactgtaatgacaacattggccacctccctgtcgaccctcaaactgaccgatacagttacaccccctccatct catgtccatggtagtaatcatggtttgtctataatgacccaggccaccccacaaatgactggtctacagcatatccataa tctaatgcagggtgttacaccaatgcaactgtctggcctaacccagacagttccttcagctgggaatcaggggattcctg tcattggaggtcagaggatacaacctgtagctggtcaaggcatgaattctgtagcaggtcaagccattcaacctgtggta ggtcaaggaatgcctcctatcaggggtcaaaacatccagcaagttggaggtcaaagcattccatcagttggaagtcaagg cataccaagtgttgggggtctaggtataccaggggctcaaggtttaccacaagttggtggtcaaggaatggcacatgtag ggggtcgggatattcaacttgtagggggtcaaggtatgacacctggaggtaatcagagcatatcccacatagggaaccag ggcatgacacctttagggggtcaaggggttactcctatagggggtcagggtattccacctttagggggtcaaggtgttac tcctatagcgggtcaaggcatgtctgtcattggtcagatgcagcagatgtacggcccagctcagcagggactacaagttg gaccacaacaacagcctactccacaaggtgttgtaccccagggattgaataatcctgtcatgatgggaatgcagcacatg atgtatccaaacatgaattctttcccaatcggtgatggggctggatattgtcccacaggaatgccttcgtacccttccct ccctgtaatgcagcctcaaagatatcccaacatgccttatcattcggggatgcctcagatgatgtcagggtatggcaata gtaacttcatgcctcaacagttcaacatgagatgtggacttaatccgtatgctgaatcatggccgtacggacagacaaat caatacaatgtgcaaccggaaggtactaccagatatgatcaggggcaaagagaagcacagttacaaaacatccaaatgct gggatctgagggtcagccggtaagtatgaggctcatggcagtgtcagaacactga |
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Protein
| Protein ID | pfu_aug2.0_358.1_27292.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_358.1_27292.t1 MHTSGAQPISMPAQTFQWTEYLSCQVCYNIFNEKGYLPVSLACGHTVCRTCLFRLPQKKCPFDQNPIMKDVEELPVNYAL LQLVGAAIPDNEETKALTTAENSQYYQSTKQCIEELALYLKPMSETNSNSNSVQAVTTAPSITQASPTLGAILSRPMQKK LLTLVNCQLVEEEGRSRAVRAARSLGERTVTELILQHQNPQQLSTNLWAAVRARGCQFLGPAMQEEVLKLILLALEDGSQ LSRKVLVLFVVQRLEKHYPQASKTAIGHVVQLLYRASCFKVTKREEESSLMQLKEEFRIYEALRREHDSQIVQIAMESGL RIAPDQWSSLLYGDTAYKSHMQSIIDKLQTPQSFAQSINELVVALQRTVDPCNLQLLRPHLDFLASVDPNPDSMSPSWEH VEAVIKAAKFVVKGLVEFVQSNGQRKSEAPLAMNMRYKTSLCRDLFQKGHCPRGSSCTFAHSHEELERYRARIRKAGKNV ALSCVTAKLTPSERAELEHVTKATDEKLAAAHSKSTKSGIDTVANETRAIVTPSATTVMTTLATSLSTLKLTDTVTPPPS HVHGSNHGLSIMTQATPQMTGLQHIHNLMQGVTPMQLSGLTQTVPSAGNQGIPVIGGQRIQPVAGQGMNSVAGQAIQPVV GQGMPPIRGQNIQQVGGQSIPSVGSQGIPSVGGLGIPGAQGLPQVGGQGMAHVGGRDIQLVGGQGMTPGGNQSISHIGNQ GMTPLGGQGVTPIGGQGIPPLGGQGVTPIAGQGMSVIGQMQQMYGPAQQGLQVGPQQQPTPQGVVPQGLNNPVMMGMQHM MYPNMNSFPIGDGAGYCPTGMPSYPSLPVMQPQRYPNMPYHSGMPQMMSGYGNSNFMPQQFNMRCGLNPYAESWPYGQTN QYNVQPEGTTRYDQGQREAQLQNIQMLGSEGQPVSMRLMAVSEH |
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