Gene
| Gene Model ID | pfu_aug2.0_361.1_04048 |
|---|---|
| Locus | scaffold361.1 : 26276 ... 48946 : + |
| To GenomeBrowser | scaffold361.1:26276..48946 |
| Genes list of scaffold | scaffold361.1 |
| Synonym | pfu_aug1.0_8491.1_38766 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| polyhomeotic-proximal chromatin isoform x3 | GO:0005634 GO:0006355 GO:0008270 GO:0043565 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_361.1_04048.t1 | 2 | 1 | Homeobox | 413 | 469 | 4.5e-25 | 87.0 | 4.8e-21 | 7.2e-17 | 60.7 |
| pfu_aug2.0_361.1_04048.t1 | 2 | 2 | Homeobox | 522 | 574 | 4.5e-25 | 87.0 | 2.6e-10 | 3.9e-06 | 26.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_361.1_04048.t1 | gi|672030406|ref|XP_008772284.1| | PREDICTED: polyhomeotic-proximal chromatin protein-like isoform X3 [Rattus norvegicus] | 2.0e-30 |
| pfu_aug2.0_361.1_04048.t1 | gi|672030402|ref|XP_008772282.1| | PREDICTED: polyhomeotic-proximal chromatin protein-like isoform X1 [Rattus norvegicus] | 4.0e-29 |
| pfu_aug2.0_361.1_04048.t1 | gi|672030404|ref|XP_008772283.1| | PREDICTED: polyhomeotic-proximal chromatin protein-like isoform X2 [Rattus norvegicus] | 8.0e-29 |
| pfu_aug2.0_361.1_04048.t1 | gi|156354313|ref|XP_001623342.1| | predicted protein [Nematostella vectensis] | 6.0e-25 |
Transcript
| Transcript ID | pfu_aug2.0_361.1_04048.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_361.1_04048.t1 atgacgaagaaaaaaggtgcaaaaagaaaaactctcagttcaacttcaagacaaaggaggggagctccaacaacaccagg ttgcagcacccacagcaaaacccaaaaacacgtactcgattcaagttctgacttggataataatgatcaggccattaatg ccgagggcaatatagacacgaccagtcttatacacggcgtgaatgtgttactgagagcagcattgttggaagataattac attgtccgccattttgaaacagcctggagcgtcggtcctagacgtgccagacgatccgatccgatccgctggatcggcgc gttccattaccagaatcagccggaacaaccggatcgattttacaaatggaacgcacccatggtaaaggtctggagttcca acatgatggcagaacagcacatacaagaccttgataaccaacatctacagcaggtgtctaacataacagaccagcactat aacataacaggccagcactataacataacagaccagcactataacataaaagaccagtactataatataacagaccagca ctataacataacagaccagcactataacataacaggccagcactataacataacagaccagcaccataacataacagacc agtactataacataccagaccagcactatagcataacagaccagtactatgaaataccagaccagcactatagcataaca gaccagcaccataacataacagaccagtactataacataccagaccagcactatagcataacagaccagcactataatat aacagaccagcactataacataacagaccagtactataacataccagaccagcacaatagcataacagaccagcactata acataacagaccagcactatagcataacagaccatcactataacataacagaccagtactataatataacagaccagcac tataacataacaaaccagcactacattgacaaggaacatgtgtccactcacatcactcccagggagaaacatgtattacc aaagtcagaacatcgtgctacaaagtcgcctgactccagtaatgttaatataaacaacttctcaaaaccctcaatatcat cagcactgttatcaacccaatccatgccaatcaacatgatgagttctcatggaggacgacaggacaaacgaaagaaattt aaacacaatatgtaccattatagcaggtatataaaacgagctaaacgaacttgctttaccaactaccagataaaagtgct gcaagaacattttgtaaggaatgcatatcccagaaattatgagcttcatcatttgtctcatatcttaaaccttagtccta gagtggtagttgtgtggtttcaaaatgctagacaaaagtcaaggaagatgcacaataaacagcctactgaacccaagatg aatgaatctcccttccaaaggactaccggtttgaacaataattgtaagaagtgctcagccgttctaatgaagaggaagtt agaggtggaaagggatgtagacagtgatgatcagcccagggataaacgtctacgcaaaaccaaactgcctgaacaacttg attatctacatcagaaatgcaagattgaccgttatccttgtagtgagcagccggagaatatgtcagcaaaagttggactc atagagagagtggtacaggccaggttccaaaacacacgcgcacatgttggcgtgaaggggtccaaggagcaggaggaaac cggagtacccggagaaaacccccctgcagaggcctgggtgggggaccacctaccatcccacataagaccctttgtcgaat ctgagattcgatcccgggaccttagagaaaagtccgagtctaaaaataagtacgctgaagcagatattattcagatgtta aacttcctgatcaacaacatttttgtggtgtttggaggaaatgtcttccagcaaattgtcggaattccaatgggaactaa ttgtgccccactccttgccgacatttttctttactcctacgaagctgaattcattcaatatttggtatctaaagggaaca gatacatagcttctaactttaacttcacttacagatacatagacgatgtgctgtccatccataatccaaaattcgcggat tacctcaacagaatctatccttcggagcttgaagtcaaaggaactacagagacaaataattcagcatcctatttggacat aatgttgtcctacgacactgatggtcacatgaacacctcaatctatgacaaaccttacatcacaaactttccttttctgt gtagcaacatcccttcatcgcctgattatggctgttaa |
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Protein
| Protein ID | pfu_aug2.0_361.1_04048.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_361.1_04048.t1 MTKKKGAKRKTLSSTSRQRRGAPTTPGCSTHSKTQKHVLDSSSDLDNNDQAINAEGNIDTTSLIHGVNVLLRAALLEDNY IVRHFETAWSVGPRRARRSDPIRWIGAFHYQNQPEQPDRFYKWNAPMVKVWSSNMMAEQHIQDLDNQHLQQVSNITDQHY NITGQHYNITDQHYNIKDQYYNITDQHYNITDQHYNITGQHYNITDQHHNITDQYYNIPDQHYSITDQYYEIPDQHYSIT DQHHNITDQYYNIPDQHYSITDQHYNITDQHYNITDQYYNIPDQHNSITDQHYNITDQHYSITDHHYNITDQYYNITDQH YNITNQHYIDKEHVSTHITPREKHVLPKSEHRATKSPDSSNVNINNFSKPSISSALLSTQSMPINMMSSHGGRQDKRKKF KHNMYHYSRYIKRAKRTCFTNYQIKVLQEHFVRNAYPRNYELHHLSHILNLSPRVVVVWFQNARQKSRKMHNKQPTEPKM NESPFQRTTGLNNNCKKCSAVLMKRKLEVERDVDSDDQPRDKRLRKTKLPEQLDYLHQKCKIDRYPCSEQPENMSAKVGL IERVVQARFQNTRAHVGVKGSKEQEETGVPGENPPAEAWVGDHLPSHIRPFVESEIRSRDLREKSESKNKYAEADIIQML NFLINNIFVVFGGNVFQQIVGIPMGTNCAPLLADIFLYSYEAEFIQYLVSKGNRYIASNFNFTYRYIDDVLSIHNPKFAD YLNRIYPSELEVKGTTETNNSASYLDIMLSYDTDGHMNTSIYDKPYITNFPFLCSNIPSSPDYGC |
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