Gene
| Gene Model ID | pfu_aug2.0_361.1_04063 |
|---|---|
| Locus | scaffold361.1 : 324029 ... 337788 : - |
| To GenomeBrowser | scaffold361.1:324029..337788 |
| Genes list of scaffold | scaffold361.1 |
| Synonym | pfu_aug1.0_15014.1_61445 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: nuclear factor nf-kappa-b p100 subunit | GO:0000975 GO:0002224 GO:0006355 GO:0008134 GO:0009967 GO:0010604 GO:0031325 GO:0031327 GO:0035556 GO:0044424 GO:0044710 GO:0050790 GO:0051173 GO:0051246 GO:0071310 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_361.1_04063.t1 | 3 | 1 | Ank_2 | 355 | 430 | 2.2e-19 | 69.5 | 2.7e-08 | 6.7e-05 | 23.1 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 1 | Ank_3 | 359 | 376 | 1.2e-13 | 49.8 | 1.8 | 4500.0 | -1.5 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 1 | Ank_5 | 359 | 375 | 1.7e-06 | 28.0 | 4.8 | 12000.0 | -3.3 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 1 | Ank | 365 | 379 | 5.6e-21 | 73.2 | 2.2 | 5400.0 | -2.5 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 2 | Ank_5 | 400 | 431 | 1.7e-06 | 28.0 | 0.019 | 47.0 | 4.4 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 2 | Ank | 402 | 431 | 5.6e-21 | 73.2 | 4.1e-08 | 0.0001 | 21.9 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 2 | Ank_3 | 402 | 429 | 1.2e-13 | 49.8 | 1.2e-05 | 0.03 | 14.5 |
| pfu_aug2.0_361.1_04063.t1 | 4 | 1 | Ank_4 | 402 | 464 | 4.2e-12 | 46.2 | 4.3e-07 | 0.0011 | 19.4 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 3 | Ank | 443 | 466 | 5.6e-21 | 73.2 | 0.0023 | 5.8 | 6.9 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 3 | Ank_3 | 443 | 464 | 1.2e-13 | 49.8 | 0.095 | 230.0 | 2.4 |
| pfu_aug2.0_361.1_04063.t1 | 4 | 2 | Ank_4 | 443 | 493 | 4.2e-12 | 46.2 | 0.0004 | 0.98 | 10.0 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 3 | Ank_5 | 444 | 485 | 1.7e-06 | 28.0 | 0.23 | 570.0 | 0.9 |
| pfu_aug2.0_361.1_04063.t1 | 3 | 2 | Ank_2 | 446 | 546 | 2.2e-19 | 69.5 | 9.8e-12 | 2.4e-08 | 34.1 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 4 | Ank_5 | 478 | 491 | 1.7e-06 | 28.0 | 0.57 | 1400.0 | -0.3 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 4 | Ank | 480 | 517 | 5.6e-21 | 73.2 | 3.5e-06 | 0.0087 | 15.8 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 4 | Ank_3 | 480 | 515 | 1.2e-13 | 49.8 | 0.0014 | 3.6 | 8.1 |
| pfu_aug2.0_361.1_04063.t1 | 4 | 3 | Ank_4 | 499 | 543 | 4.2e-12 | 46.2 | 9.6e-05 | 0.24 | 11.9 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 5 | Ank_5 | 508 | 543 | 1.7e-06 | 28.0 | 0.00035 | 0.87 | 9.9 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 5 | Ank | 525 | 544 | 5.6e-21 | 73.2 | 0.002 | 5.1 | 7.1 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 5 | Ank_3 | 525 | 544 | 1.2e-13 | 49.8 | 0.02 | 49.0 | 4.5 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 6 | Ank_5 | 555 | 573 | 1.7e-06 | 28.0 | 0.0093 | 23.0 | 5.4 |
| pfu_aug2.0_361.1_04063.t1 | 4 | 4 | Ank_4 | 562 | 579 | 4.2e-12 | 46.2 | 0.0057 | 14.0 | 6.3 |
| pfu_aug2.0_361.1_04063.t1 | 3 | 3 | Ank_2 | 563 | 598 | 2.2e-19 | 69.5 | 0.0005 | 1.2 | 9.4 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 6 | Ank | 565 | 596 | 5.6e-21 | 73.2 | 1.5e-05 | 0.038 | 13.8 |
| pfu_aug2.0_361.1_04063.t1 | 6 | 6 | Ank_3 | 565 | 595 | 1.2e-13 | 49.8 | 7.7e-05 | 0.19 | 12.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_361.1_04063.t1 | gi|637319251|ref|XP_008112430.1| | PREDICTED: LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p100 subunit [Anolis carolinensis] | 1.0e-16 |
| pfu_aug2.0_361.1_04063.t1 | gi|675879618|ref|XP_009025337.1| | hypothetical protein HELRODRAFT_189103 [Helobdella robusta] | 5.0e-16 |
| pfu_aug2.0_361.1_04063.t1 | gi|507666124|ref|XP_004636687.1| | PREDICTED: NF-kappa-B inhibitor zeta [Octodon degus] | 5.0e-15 |
| pfu_aug2.0_361.1_04063.t1 | gi|212526|gb|AAA49000.1| | p105 [Gallus gallus] | 1.0e-14 |
| pfu_aug2.0_361.1_04063.t1 | gi|2130628|gb|AAB58343.1| | nuclear factor NF-kB1 [Gallus gallus] | 1.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_361.1_04063.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_361.1_04063.t1 atgactgttacaccagtttcaaagacaagacatcccacaatgcatcgggacagtacaggaagtgagagcgaggatgagtc ccgcagcacagatgatattatcagtctattggatagtctaaaaataggctcagagaaacctgctgtaaaacaggagaaag actattccagtgatttgatcagtaaaggtcctaaggatagttttatgagaagaggaccctatcctaccagcgagacccca aatcgtcctatatccttcattccgtctcatcgtccaaacacgacctcattaaaatacgaaccgggtctgcatgacctaca atttccaaaatggaactacactcagtctgatagctttgccccaggacaaaatgatagttgccggtattggacaaaggcaa aacaagaaaatcgtctaccccaactaatgaaagagcagcaaaggttgtttgaatattacagaaatcaacgaaatcaaaag aggaacacttcttatacacagggaaggcagcaaaaaaaatccgcgttcacacaacggcaacaagataaaggttttgatgt gatagatggaatagatggacgagacgatgatctcagccaatcagatttggagacagactttgctggcaatgactgtcatt tcattagtacccatgaccctttcctctcagtaaaggaccagttttcacccatctccaaggaaacatggtctccactttca aacttacaactcaatgaagttgagcaagctccggaatctgagcaagacctaatgctcagagatatcgaggagaccattaa agctgttaaacactccccaccacatttaaatacggcatacccggattgtagtgataacttgaatctttttggagattata acgtggagacttttccaaattcgagtacagtatattcatcacagaaagttacagaagtggaagagtcgcagaaatctgag cctgcggaaaaatgttcaaggaaaaggacggagagtgattggagggaggagtgtaagccgtctccaccaaaacttgctgc caccgacccgatgtacgataaagacattgacgaggacaatattcttcacagcctgataatagccaacgccagcccagagg tcatcgaggatgtactgaactgtttaaagttagaagataacaatgtactggagagaataattaacgaacaaaatcaatta ctcaggacgccattgttcctagcagtgatggattgtaaaccagtgattgtccaaaccttactggaatacggtgctaatcc aaacatccaaggaaaggttctcactataatggatgaatatgacttgagatcaccactccatctagtggcagaaatgggag atcaaggactacaactcctgcagattctgcttggctgtgagagaaccaatatagatcagaccagtgaaagtgatttactt acgcctcttcacattgtgttgaaatgccatagggttaaaatcaacaacaacacgcagagctgctttaaaaccgtcaaaat gctactggataaaggtgcagatactgatatagtggaagaaacgacgagtaagactccagtcatgctggctatagagacca gggacatcgacctgattaagttatttttagacgcggaggactctaccaaacaagcgttcattcacgacagattgcaagcc attacaagaggtggcgatactccactacatattgccgcaggcgtcaatatgaagcgaaaggaaaagatgaaattattacg tattttagttcggagcggtgccgacacaaaaatatcaatgactaatactttacttcagtaa |
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Protein
| Protein ID | pfu_aug2.0_361.1_04063.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_361.1_04063.t1 MTVTPVSKTRHPTMHRDSTGSESEDESRSTDDIISLLDSLKIGSEKPAVKQEKDYSSDLISKGPKDSFMRRGPYPTSETP NRPISFIPSHRPNTTSLKYEPGLHDLQFPKWNYTQSDSFAPGQNDSCRYWTKAKQENRLPQLMKEQQRLFEYYRNQRNQK RNTSYTQGRQQKKSAFTQRQQDKGFDVIDGIDGRDDDLSQSDLETDFAGNDCHFISTHDPFLSVKDQFSPISKETWSPLS NLQLNEVEQAPESEQDLMLRDIEETIKAVKHSPPHLNTAYPDCSDNLNLFGDYNVETFPNSSTVYSSQKVTEVEESQKSE PAEKCSRKRTESDWREECKPSPPKLAATDPMYDKDIDEDNILHSLIIANASPEVIEDVLNCLKLEDNNVLERIINEQNQL LRTPLFLAVMDCKPVIVQTLLEYGANPNIQGKVLTIMDEYDLRSPLHLVAEMGDQGLQLLQILLGCERTNIDQTSESDLL TPLHIVLKCHRVKINNNTQSCFKTVKMLLDKGADTDIVEETTSKTPVMLAIETRDIDLIKLFLDAEDSTKQAFIHDRLQA ITRGGDTPLHIAAGVNMKRKEKMKLLRILVRSGADTKISMTNTLLQ |
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