Gene
| Gene Model ID | pfu_aug2.0_3617.1_25798 |
|---|---|
| Locus | scaffold3617.1 : 23408 ... 30505 : - |
| To GenomeBrowser | scaffold3617.1:23408..30505 |
| Genes list of scaffold | scaffold3617.1 |
| Synonym | pfu_aug1.0_5052.1_45100 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| usher syndrome type-1g protein homolog | GO:0044707 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3617.1_25798.t1 | 3 | 1 | Ank_4 | 6 | 50 | 1.5e-20 | 73.1 | 8.6e-09 | 1.6e-05 | 25.2 |
| pfu_aug2.0_3617.1_25798.t1 | 2 | 1 | Ank_2 | 7 | 92 | 8.1e-26 | 90.1 | 2.3e-16 | 4.3e-13 | 49.4 |
| pfu_aug2.0_3617.1_25798.t1 | 3 | 1 | Ank_5 | 7 | 20 | 1.5e-15 | 56.8 | 1.0 | 1900.0 | -0.8 |
| pfu_aug2.0_3617.1_25798.t1 | 4 | 1 | Ank | 7 | 19 | 6.0e-14 | 51.0 | 4.4 | 8200.0 | -3.1 |
| pfu_aug2.0_3617.1_25798.t1 | 4 | 1 | Ank_3 | 7 | 21 | 2.5e-11 | 42.6 | 0.62 | 1100.0 | 0.3 |
| pfu_aug2.0_3617.1_25798.t1 | 3 | 2 | Ank_5 | 17 | 62 | 1.5e-15 | 56.8 | 1.5e-08 | 2.7e-05 | 24.2 |
| pfu_aug2.0_3617.1_25798.t1 | 4 | 2 | Ank | 32 | 63 | 6.0e-14 | 51.0 | 3.5e-06 | 0.0065 | 16.2 |
| pfu_aug2.0_3617.1_25798.t1 | 4 | 2 | Ank_3 | 36 | 59 | 2.5e-11 | 42.6 | 0.0034 | 6.4 | 7.3 |
| pfu_aug2.0_3617.1_25798.t1 | 2 | 2 | Ank_2 | 38 | 118 | 8.1e-26 | 90.1 | 1.3e-15 | 2.5e-12 | 46.9 |
| pfu_aug2.0_3617.1_25798.t1 | 3 | 2 | Ank_4 | 38 | 86 | 1.5e-20 | 73.1 | 6.3e-13 | 1.2e-09 | 38.4 |
| pfu_aug2.0_3617.1_25798.t1 | 3 | 3 | Ank_5 | 56 | 106 | 1.5e-15 | 56.8 | 8.8e-12 | 1.6e-08 | 34.4 |
| pfu_aug2.0_3617.1_25798.t1 | 4 | 3 | Ank | 66 | 95 | 6.0e-14 | 51.0 | 8.3e-10 | 1.5e-06 | 27.6 |
| pfu_aug2.0_3617.1_25798.t1 | 4 | 3 | Ank_3 | 66 | 92 | 2.5e-11 | 42.6 | 8.0e-10 | 1.5e-06 | 27.8 |
| pfu_aug2.0_3617.1_25798.t1 | 3 | 3 | Ank_4 | 68 | 118 | 1.5e-20 | 73.1 | 1.4e-09 | 2.5e-06 | 27.8 |
| pfu_aug2.0_3617.1_25798.t1 | 4 | 4 | Ank_3 | 100 | 118 | 2.5e-11 | 42.6 | 0.51 | 940.0 | 0.6 |
| pfu_aug2.0_3617.1_25798.t1 | 4 | 4 | Ank | 101 | 118 | 6.0e-14 | 51.0 | 0.043 | 79.0 | 3.3 |
| pfu_aug2.0_3617.1_25798.t1 | 2 | 1 | SAM_2 | 343 | 350 | 1.3e-08 | 34.5 | 7.3 | 14000.0 | -4.0 |
| pfu_aug2.0_3617.1_25798.t1 | 2 | 2 | SAM_2 | 429 | 485 | 1.3e-08 | 34.5 | 2.5e-11 | 4.7e-08 | 32.7 |
| pfu_aug2.0_3617.1_25798.t1 | 1 | 1 | SAM_1 | 430 | 485 | 1.9e-12 | 47.1 | 2.7e-15 | 5.0e-12 | 45.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3617.1_25798.t1 | gi|676490092|ref|XP_009065157.1| | hypothetical protein LOTGIDRAFT_210994 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3617.1_25798.t1 | gi|602642601|ref|XP_007428087.1| | PREDICTED: Usher syndrome type-1G protein homolog [Python bivittatus] | 0.0 |
| pfu_aug2.0_3617.1_25798.t1 | gi|524889289|ref|XP_005101205.1| | PREDICTED: Usher syndrome type-1G protein homolog isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_3617.1_25798.t1 | gi|736212850|ref|XP_010777744.1| | PREDICTED: Usher syndrome type-1G protein homolog [Notothenia coriiceps] | 0.0 |
| pfu_aug2.0_3617.1_25798.t1 | gi|395532955|ref|XP_003768529.1| | PREDICTED: Usher syndrome type-1G protein [Sarcophilus harrisii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3617.1_25798.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3617.1_25798.t1 atgggagacgataaatatcacagagcggcccgggacgggtacgtggacctgctgaaggaagccaccaaacgagatcttaa cctgacagatgaggatggaatggtgcccgcccactgggctgcttaccatggcaatgtcgatgccctccggaccatcgtcg ggcgtgggggcgacccagacaagccagatttacttggtttcacctctctacatcatgcatgtcggaatggtcacatgaac gccgtgtcctttctcgtgaactatggatgcaatatttggtcgttggacaatgagtatcacacggctatggacatcgccgc tttgggagggaaggaaaacatcgtaagcgccttggacggggaacatgcccgacagaaacgattaaatccgaaatcagctg agcaacagagtcaaagggcggtgaaattggctgatcagaatatcaaaagatacgagcaacgccaaagggaggccgcgagg tatgcagagagggaacaacgacgaatccaagcagaaaccgatcctgactttaaacctccctctggtaaaaatttcttcaa aacgttgacgatgaggttcaaaaataataaagggacaaggagatattcaagtaatcaaaatggtgttacaagcttctccg aaatgacgcaacaatctacaaagagaggtataggaagaaagattctacaaaagaaagcgagtcaggacaccgcttctatt aatgattttcgaatcagtgaaagagactctagtggaaatagaacattaaggtctgttggtggaggattcagaaaaaattc tgatgttctgtatcttactaacagggaaaacgatgcgcaaagtggtgcgcgcaagcctttacagggattgtttcctggtg gcatgcaaagaaataaatcaaaaagtgaaaatgatttgttagattccggatttgaagataatagtaattcgtccaacaat aatgaagaagatgacgaggaaaataagccaggtctactttttcggcctggtatgggtcaaatatcctttcttaaaagtca tggcatggccgggacattgagctccatgacacgttcggcatcatacgacccactttcagcaccagatagcgcagtgaatc acggtcacactgacagtgttgacggtggggatccagctaacaagcgaaaaagtggtagctctgatagtatagggaccacc acaagtcttgaggaacgcatgaaggagacactaccatggaacccggatgaagtatgctctgatgacgaagaggaagacac agagacgtctgctttaattcggttcctggaggcatgtgacctcaaccactacacaagactgtttaatgagcaggagattg acctccaagcacttatgcttctctccgatgatgacatggagaaattaggactgaagataggtccgaggaaaaaactacaa attgccataaagaaaagacaagaggtgttggacaatccacttccgctgcgtgattctcatctatag |
|
Protein
| Protein ID | pfu_aug2.0_3617.1_25798.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3617.1_25798.t1 MGDDKYHRAARDGYVDLLKEATKRDLNLTDEDGMVPAHWAAYHGNVDALRTIVGRGGDPDKPDLLGFTSLHHACRNGHMN AVSFLVNYGCNIWSLDNEYHTAMDIAALGGKENIVSALDGEHARQKRLNPKSAEQQSQRAVKLADQNIKRYEQRQREAAR YAEREQRRIQAETDPDFKPPSGKNFFKTLTMRFKNNKGTRRYSSNQNGVTSFSEMTQQSTKRGIGRKILQKKASQDTASI NDFRISERDSSGNRTLRSVGGGFRKNSDVLYLTNRENDAQSGARKPLQGLFPGGMQRNKSKSENDLLDSGFEDNSNSSNN NEEDDEENKPGLLFRPGMGQISFLKSHGMAGTLSSMTRSASYDPLSAPDSAVNHGHTDSVDGGDPANKRKSGSSDSIGTT TSLEERMKETLPWNPDEVCSDDEEEDTETSALIRFLEACDLNHYTRLFNEQEIDLQALMLLSDDDMEKLGLKIGPRKKLQ IAIKKRQEVLDNPLPLRDSHL |
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