Gene
| Gene Model ID | pfu_aug2.0_3637.1_25808 |
|---|---|
| Locus | scaffold3637.1 : 44401 ... 48215 : - |
| To GenomeBrowser | scaffold3637.1:44401..48215 |
| Genes list of scaffold | scaffold3637.1 |
| Synonym | pfu_aug1.0_5630.1_09176 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3637.1_25808.t1 | 1 | 1 | RVT_1 | 22 | 180 | 7.5e-20 | 71.2 | 2.0e-23 | 1.4e-19 | 70.2 |
| pfu_aug2.0_3637.1_25808.t1 | 2 | 1 | rve | 317 | 345 | 1.5e-21 | 76.6 | 1.6 | 12000.0 | -3.7 |
| pfu_aug2.0_3637.1_25808.t1 | 2 | 2 | rve | 428 | 540 | 1.5e-21 | 76.6 | 6.4e-25 | 4.8e-21 | 75.1 |
Transcript
| Transcript ID | pfu_aug2.0_3637.1_25808.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3637.1_25808.t1 atgctcaaagcagatgtaatagagccatctatgtcagagtgggcatcgtcgccggtgctcgtgaggaaacgtgacggtag tgtgagatggtgcgtcgattaccgagctctcaacaaggtaactaagaaagacgtattcccattgccattggtggaggaat gcatggattccttgtcaggtaatctttggtactcaaaattagatgccacatggagatattggcaaattaaagtcaaagat gaagacaaatgtaaaacagccttcaccactaaatacggcttgtaccagtttaagaggatgagctttggattgacgaacgc gccaagcacattttcgagagtgatgaatcttgttttacgaggtttgcattggaggacagttttggcttttcttgatgatg ttttggttctcggtaagtcttttgatgatcacgtcgagaacttagcggaagtattcgacagatgtagagaatatggtatc aaacttaaggccaaaaagtgtgatttgtttcgacaggaagtggaatatttaggaagaaccgtaggacgtgacggtatgag agtaagccagagttttattgacactatggaaaaatggaaaccaccaaccaatacaaaggaagtagagcggttctgtggtt atgcgaactaccataggaatttcataaaagactttgccggaattgccgcacctctatatggtcttactggaaaaaataag ttccactgggaggaagaacatcagtgcgcctttgagcaattaaaatctgctctgagtagtgcaccagtgttaaccatacc aaccaaggatgattacttcattttggatacggatgcatcggacattgccatcggagccgaacttatccagattcaggatg gagaagagaggagtatttcgttttgcagtttttccttaactccggaacaacgtaaatactgtacaacgaagaaagagttg cagtgatggttagaggaactcagccaatattggatggttatccgtcaccgtcccggagttaaacaccagaatgctgattg gctgtccagactctcggataacagcacgtcaacatgccaggagtatagacactgtgtacaaccaactgaattgccatgtg gaggttgtaatcactgccagaagaaacatcaagagtggagtcatttcacggagatggtggacgaggccgtaccactaacg agtaccatggtaaggcaagttaaaacaaccaaacctatgtcatggatgcnaagatgtaagtttacatcatatcacgcagg atcacctatggagcgtatgcatctcgattttctaggtcccttacctgttaccacgaataacaacacgtgtgtcttgatga tggtggaccagtttaccaaatgggtggagtgtataccattgccaaaccaaacagctgaggttacagtccaagccgcaggt gatcactttttctccagatttggtataccttatcaaatatttacagatagagggtcaaattttgaaagttcattgttcaa ggaactttgtgagaagctatctatccacaaagcaagaacaacagcgtttagaccatcagcaaatggccaagtagagcgat acaaccggactctaatgaatgctgtacgatgcttttgtagcaggtctccaaagagttgggatgaatatttaccacaactt tcatccgcgttgagatcttctattaaccggagtacaggattcaccccaaatatgctgatgttgggtagagagatcaacat gcctgtggatctgagatttcctggtcccgatccagaagatacggaggaccatgagggttatgtgaacgacttagcatcgc atattcaggaagcacacgagattgctcgcgagaaactaaagtcaggtcaagctatcatgaagcgtgatgctgtgtatatc ttagatacagctatacccaaaggtaagtgtgccaagttaagacctcaatggaaggggcctggacttgtggtgaaaaggat cactgattatgtttatcaagtgatgctcagaaggaaactggaagtgattggccatgacaggatgaagttatgtacagaca aggaactgcctatgtggttacatggacaaagacaatatcttgaggatgggtccccattacagattagtaaaccaggaaac tcaagtcaagattccagcccggaaaagagagcctggaaagtggtccagaagaaggacaagggcaaaggaaagggcaaggg caagagttctgacaagggcaaaggaaaggccaaagggacatccggtagccgttacgcggatgttgagaggatgagaactg gtgaggagagatgggaggaggtcttgcgtcgagctagcgaggccaatgtgttgttggagcctactgggttttatcgaaga attgccgcattggaccatcatctgagggaagaatgcgtgcagcgccagtaccaggtagccaagaggttccgtgatgcccg ttggatctcgagcatcaggagggatgcaacgtttgattttccgaacgactggattgaggaacatatcccatccttagacg gtaggaaattgcccgtctccaaacctagtaagaagagttctgcaggtgaataccaggctggaccatccagggacttcaga ttgaaagcaaacctcgaaatgcgggtttatagagcgaacgctgctgctgatgacaacgccgttcccagtgagttgaaggc tgaggatccattatattcagaggacccattacctttagaagatccctcaccactggaagagccaatggatacgtcaggag cagtgcaggaggaagttctggtggaaacacagcagcctgcagagacggaggtgtcaccgcctaccttggaacggtcggtg agagaggatatggtcattccatccattgttatcacaccgcctactgaagggtcggtgttggaggagaagtctgttccacg gagcaaatctaccggtatcaggatatcacctgtaaaggcaccgcccaaacaggacgtcagaccgaaatccgatgtaagat caaaatcttcatctgacagatccagagctgacacgcggtccaaatccaatgacaatgacaatgacaatgacaatgtttat ttactaactcaggcacacaaaggtgctacaagagcaataaataatacaattgcagcaaacgttaaggcaaacaaaaagta a |
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Protein
| Protein ID | pfu_aug2.0_3637.1_25808.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3637.1_25808.t1 MLKADVIEPSMSEWASSPVLVRKRDGSVRWCVDYRALNKVTKKDVFPLPLVEECMDSLSGNLWYSKLDATWRYWQIKVKD EDKCKTAFTTKYGLYQFKRMSFGLTNAPSTFSRVMNLVLRGLHWRTVLAFLDDVLVLGKSFDDHVENLAEVFDRCREYGI KLKAKKCDLFRQEVEYLGRTVGRDGMRVSQSFIDTMEKWKPPTNTKEVERFCGYANYHRNFIKDFAGIAAPLYGLTGKNK FHWEEEHQCAFEQLKSALSSAPVLTIPTKDDYFILDTDASDIAIGAELIQIQDGEERSISFCSFSLTPEQRKYCTTKKEL QXWLEELSQYWMVIRHRPGVKHQNADWLSRLSDNSTSTCQEYRHCVQPTELPCGGCNHCQKKHQEWSHFTEMVDEAVPLT STMVRQVKTTKPMSWMXRCKFTSYHAGSPMERMHLDFLGPLPVTTNNNTCVLMMVDQFTKWVECIPLPNQTAEVTVQAAG DHFFSRFGIPYQIFTDRGSNFESSLFKELCEKLSIHKARTTAFRPSANGQVERYNRTLMNAVRCFCSRSPKSWDEYLPQL SSALRSSINRSTGFTPNMLMLGREINMPVDLRFPGPDPEDTEDHEGYVNDLASHIQEAHEIAREKLKSGQAIMKRDAVYI LDTAIPKGKCAKLRPQWKGPGLVVKRITDYVYQVMLRRKLEVIGHDRMKLCTDKELPMWLHGQRQYLEDGSPLQISKPGN SSQDSSPEKRAWKVVQKKDKGKGKGKGKSSDKGKGKAKGTSGSRYADVERMRTGEERWEEVLRRASEANVLLEPTGFYRR IAALDHHLREECVQRQYQVAKRFRDARWISSIRRDATFDFPNDWIEEHIPSLDGRKLPVSKPSKKSSAGEYQAGPSRDFR LKANLEMRVYRANAAADDNAVPSELKAEDPLYSEDPLPLEDPSPLEEPMDTSGAVQEEVLVETQQPAETEVSPPTLERSV REDMVIPSIVITPPTEGSVLEEKSVPRSKSTGIRISPVKAPPKQDVRPKSDVRSKSSSDRSRADTRSKSNDNDNDNDNVY LLTQAHKGATRAINNTIAANVKANKK |
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