Gene
| Gene Model ID | pfu_aug2.0_364.1_14051 |
|---|---|
| Locus | scaffold364.1 : 72226 ... 164518 : + |
| To GenomeBrowser | scaffold364.1:72226..164518 |
| Genes list of scaffold | scaffold364.1 |
| Synonym | pfu_aug1.0_14613.1_46776 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_364.1_14051.t1 | 7 | 1 | Methyltransf_FA | 52 | 136 | 1.2e-29 | 102.2 | 0.00024 | 0.71 | 9.9 |
| pfu_aug2.0_364.1_14051.t1 | 8 | 1 | Ldl_recept_a | 148 | 184 | 0.0 | 178.8 | 2.5e-12 | 7.4e-09 | 35.3 |
| pfu_aug2.0_364.1_14051.t1 | 1 | 1 | CUB | 442 | 534 | 7.1e-08 | 32.5 | 6.7e-11 | 2.0e-07 | 31.0 |
| pfu_aug2.0_364.1_14051.t1 | 8 | 2 | Ldl_recept_a | 561 | 568 | 0.0 | 178.8 | 2.5 | 7400.0 | -3.1 |
| pfu_aug2.0_364.1_14051.t1 | 2 | 1 | MAM | 597 | 754 | 1.3e-23 | 83.5 | 1.1e-26 | 3.3e-23 | 82.2 |
| pfu_aug2.0_364.1_14051.t1 | 7 | 2 | Methyltransf_FA | 853 | 897 | 1.2e-29 | 102.2 | 0.58 | 1700.0 | -1.0 |
| pfu_aug2.0_364.1_14051.t1 | 8 | 3 | Ldl_recept_a | 909 | 945 | 0.0 | 178.8 | 7.3e-08 | 0.00022 | 21.0 |
| pfu_aug2.0_364.1_14051.t1 | 8 | 4 | Ldl_recept_a | 948 | 984 | 0.0 | 178.8 | 6.2e-13 | 1.8e-09 | 37.3 |
| pfu_aug2.0_364.1_14051.t1 | 7 | 3 | Methyltransf_FA | 1028 | 1115 | 1.2e-29 | 102.2 | 0.00057 | 1.7 | 8.7 |
| pfu_aug2.0_364.1_14051.t1 | 8 | 5 | Ldl_recept_a | 1124 | 1159 | 0.0 | 178.8 | 1.9e-12 | 5.7e-09 | 35.7 |
| pfu_aug2.0_364.1_14051.t1 | 7 | 4 | Methyltransf_FA | 1203 | 1290 | 1.2e-29 | 102.2 | 0.00057 | 1.7 | 8.7 |
| pfu_aug2.0_364.1_14051.t1 | 8 | 6 | Ldl_recept_a | 1299 | 1334 | 0.0 | 178.8 | 1.9e-12 | 5.7e-09 | 35.7 |
| pfu_aug2.0_364.1_14051.t1 | 7 | 5 | Methyltransf_FA | 1378 | 1464 | 1.2e-29 | 102.2 | 5.0e-07 | 0.0015 | 18.5 |
| pfu_aug2.0_364.1_14051.t1 | 2 | 2 | MAM | 1447 | 1459 | 1.3e-23 | 83.5 | 1.7 | 5000.0 | -2.9 |
| pfu_aug2.0_364.1_14051.t1 | 8 | 7 | Ldl_recept_a | 1473 | 1511 | 0.0 | 178.8 | 2.2e-08 | 6.4e-05 | 22.7 |
| pfu_aug2.0_364.1_14051.t1 | 7 | 6 | Methyltransf_FA | 1555 | 1623 | 1.2e-29 | 102.2 | 0.0014 | 4.2 | 7.4 |
| pfu_aug2.0_364.1_14051.t1 | 8 | 8 | Ldl_recept_a | 1651 | 1687 | 0.0 | 178.8 | 1.2e-11 | 3.4e-08 | 33.2 |
| pfu_aug2.0_364.1_14051.t1 | 7 | 7 | Methyltransf_FA | 1733 | 1822 | 1.2e-29 | 102.2 | 1.8e-13 | 5.5e-10 | 39.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_364.1_14051.t1 | gi|478512859|ref|XP_004430689.1| | PREDICTED: SCO-spondin [Ceratotherium simum simum] | 4.0e-16 |
| pfu_aug2.0_364.1_14051.t1 | gi|507636359|ref|XP_004629142.1| | PREDICTED: SCO-spondin [Octodon degus] | 4.0e-14 |
| pfu_aug2.0_364.1_14051.t1 | gi|507577070|ref|XP_004672068.1| | PREDICTED: LOW QUALITY PROTEIN: SCO-spondin [Jaculus jaculus] | 1.0e-13 |
| pfu_aug2.0_364.1_14051.t1 | gi|742139773|ref|XP_010842184.1| | PREDICTED: LOW QUALITY PROTEIN: SCO-spondin [Bison bison bison] | 2.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_364.1_14051.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_364.1_14051.t1 atgttaacaaaacaagaatttgaagccatccatatcaaacctcgtaccaccataaaccttttggactatgggctacatct taatggtagctctgaattcaagttttctgtgaagacatgtgaagacgcttggataaaattgctgaacaggggatcaaggc tatatgaaattggtctaggacgaggcaaaaatagtaggtcaactcttttcaaagaaggaagtaatctcccaaaacgtcac tatggcgcaattgtggactgcgataagttccttcccttctatattacttggtctggatcaagagtactcgtgggacgtgg ttatgagataggtgaaaatgttatactggagcttaaagatacctatacccccaagatcgatcaaatttcactgggttccc atgccaaagacgtcttcttcaatatcgaagcagccctgccaccatgcagttccaacgagttccgttgtggatatgggcgg tgtatagctggcgctgagagatgtgatggtgttattctacactgcacagacggctctgatgagaagaactgtccacaaaa tcgaaaattcagaaaatcagaaaccgaaggcatacaaaatcaggataaaacaggaaccaaaacaaacaaacaaaaacctc caccacatgaaaagaagcgaattcccgatatgggagtgagaccaggtgcccaggaagatcaaacagcaactggaggcatg aagctggcatatctgttcgtcctacttattttggaacaactgaacaaagagagcaaagggttggctctgatttctgtaaa tcttaaagcttctagaagtctcagtttgtgtaaatttgatgcaacaacaaacatagagggttctcaaccatttgcagctg caatgggaaaagatgcggaaaaccttggtatggttgttgagcataatggaggaaaggaaacaaagaggatgaaaagaaat ctttcgcgtcgcaagggagtttggccaaaagggatcattccatacaccatagatgggacaaaaataggacgtcagttgac aatgattgcagtattgaaggttgacgattggttggtcgccagtttagagtatttgagaagatgcacatctactattggaa tggcgaaagcttatcaaggcataagtcttcctaatggttgcatgaatcaaaagaacgaggtggttatggaggcagttgac ccttaccagagattcctcatatcggctcggaagccaaatacacttcaattctatgacattcaagaagtgacaggaatgta caattgcacagactgtggaggcatccatgacgtagaggtaggaaaagaagtccagatacaaacaccgaactatccagaaa catatccagttaacaagacctgtcgctggctgttcagaggtaaggcaggataccatttacgaatgacaatcgacgatatg cagcttccatataacaacttggatttatgctaccactggatggagatacagtataacaatttaggtcatccaggaattaa acgatgtggcgaggcggctgggctgacgtttactgcagctagggattctccgacgttgatgatggtcggctttgacagta aagctcatccatcacggaccccagaaaaaggcttctcatatagagtgtacctcctcagtgactactgtattaacgatcct tgccattttggaaaatgtatcgagactgatatcggatacaaatgtgtttgtgaatccggatttgccggggaccactgtga acaagcagatgttggaagatcattctcatgtgatttcgacaatgacatgccgtgtctttttaagaatacagcagatggag atcagtttgactgggttgtaaataagtacacatcagtttataaagatataggcgtgacatatgcaagaacgggtgatggt tacctctacgccaatatgttcacccatagaaaatcgaatgatgttgctcatttcataacaaggtttccacttaaagccga agaccggtgcttgtcctttttctacaatatgaatggtcagcacagctcaaccttgagtgtaaagtcgaagtctagtaaaa gttcttccttcgatacgatatggataaagcatggtgggcaaggtccaaattggcaccatgcagaagttttcctactcaca gaagtctctgaaaatcttgagctattatttgaagtcgttaaaggtaacaactccagtttgatttccttggataacatcac tctagcaccaggatcttgtcattttaatgggatacatgacatcgtgcacgtcaccacgttgaggtcatggcgacaaaatt tgacagaatttggtatgaccttcgaggggataggatggattaattttgaagttcatgcatgttatgctgtacttgtgcag ttacgaactggttcaaattcatcgggggttcattacaatcttcattttggaaacagaaataacagattcagagcatttag tgtcaccttgaataagtacgaaaatggaaagaagacgattaatatcatcgtattcacaccgaccacagattgtaatagtt ataagccattttggtttggatggaaagataacaagttgcagtttggcagaggatttgtctatggcaaagacattatcctt tcaggaaacgatccaaatctccaggatgtgaaacatgtgattgtttcctcaggcgtaaaagcaaaatggatcttcagtaa aggaaattgtgtgtcaggattcggaaagtgtggagacacaggttactgtgttattcctgaagaagtctgtgacaacataa ataactgtgctgacggaagtgatgaaaaagactgcgttttcccagcatgtgaagcttcagaatttcgatgcacatatggc cgctgctatcctggtacagtaaaatgtgatgggaaaacagattgctctgataatagtgacgagctggattgtcctatcca tttgaagcctcgtagaactttaaacctttcgcaatatggactacatcctaatggtagctcgaatttcaagttttctgtga agacatgtgaagaggcagtggtgaaaatgtggaacaggggaacaagactctatgaaattggtcttggacgaggaaaaaat agtagatcaaccctattcaaagcaggaagccatcctccactccgtcattatggtgcagttgtggactgcgagaagttcct tcccttccatataagttggtctggatcaagcgtacaagtggggcgaggacatgagttaggcacggatgttatactcgagc ttaaagatacagtaacatcaacgattgatgaaatttcagtatcttcctattcaaaagacgtcttcttcaatatcgaagca gccttgcctccatgtcgtaccaacgagtaccgttgtgggtatggtagatgtattgttggagcctatagatgtgatgatat tacacactgcacagacggctctgatgaaaaggactgtcctatccatttgaagcctcgtagaactttaaacctttcgcaat atggactacatcctaatggtagctcgaatttcaagttttctgtgaagacatgtgaagaggcagtggtgaaaatgtggaac aggggaacaagactctatgaaattggtcttggacgaggaaaaaatagtagatcaaccctattcaaagcaggaagccatcc tccactccgtcattatggtgcagttgtggactgcgagaagttccttcccttccatataagttggtctggatcaagcgtac aagtggggcgaggacatgagttaggcacggatgttatactcgagcttaaagatacagtaacatcaacgattgatgaaatt tcagtatcttcctattcaaaagacgtcttcttcaatatcgaagcagccttgcctccatgtcgtaccaacgagtaccgttg tgggtatggtagatgtattgttggagcctatagatgtgatgatattacacactgcacagacggctctgatgaaaaggact gtccaatcgaagtgccaaaaagaacagaagacgtcatatcaaatcatcagtataacatcacaggaatgaattggataaat ttcgaagtacaaagttgtggtgatgcttttgtcaaactgttacaagaaggcaatgtcatgttcggtgtcttgctaggaag aggaggaaatacgtggaattccctcattaattacgtaacagaacaggaaaagcataagtcaaacacaccagttcttgact gtaatagatacaagcaattttggttttcatggagtgatgggcacgtgaaggttggacagggacttctcaagggaaataac cttctgcttcagctgtcatacaactcgcctgttaaaatagacgatgtacaactacaatcatatggcaatgataacgtatt caaaataagacaaggaaattgttttgaggggcttttcaaatgttctgagagagcagagtgcatttcacttgataagaaat gtgatagcatgtctgattgcgcaactactggtggttcagacgaacacaattgtgccatccatatcaaacctcgtaccacc ataaacctttcggactatgggctacatcctaatggtagttctgaattcaaattttccgtgaggacatgtgaagacgcttg gataaaattgctgaacaagggatcaaggctatatgaaattggtctaggacgaggcaaaaatagtaggtcaacccttttca aagcaggaagtaatctcccaaaacgtcactatggcgcaattgtggactgcgataagttccttcccttctatattacttgg tctggatcaagagtactcgtgggacgtggtcatgagataggtgaaagtgttatactggagattgaaaatacctttaccct caagattgatcaaatttcactgggttcccatgccaaagacgtcttcttcaatatcgaagcagccctgccaccatgcagtt ctaacgagttccgttgtggatatgggcggtgtatagctggcgctgagagatgtgatggtgttgttctacactgcacagac ggcactgatgagaagaactgtccaatcttggttccaaaactttggaaaagacgttacattgatctggaaccatttggtat aacagggaagggacgaagcgcgttaatattttcaactgatacctgcaacactttgtggattggtctcatgccagataagc acgacacgtcctcaatgtatgaaataagtcttgctcgtggaaataatgactttatcgctatagaaaaggatggtaaagag aagaaacgagttagatcttccatacttgactgtactccaaaggagctgtggattacatggaaagacggaagaattgcagt tggcgaaggaaccgacattacaaagaatgtagtcatggagtggaccgatgacgatcctttggatgtaaacgacatcggcc tgtcatcttggcataaagagtggactttccaaaacattgacttgtga |
|
Protein
| Protein ID | pfu_aug2.0_364.1_14051.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_364.1_14051.t1 MLTKQEFEAIHIKPRTTINLLDYGLHLNGSSEFKFSVKTCEDAWIKLLNRGSRLYEIGLGRGKNSRSTLFKEGSNLPKRH YGAIVDCDKFLPFYITWSGSRVLVGRGYEIGENVILELKDTYTPKIDQISLGSHAKDVFFNIEAALPPCSSNEFRCGYGR CIAGAERCDGVILHCTDGSDEKNCPQNRKFRKSETEGIQNQDKTGTKTNKQKPPPHEKKRIPDMGVRPGAQEDQTATGGM KLAYLFVLLILEQLNKESKGLALISVNLKASRSLSLCKFDATTNIEGSQPFAAAMGKDAENLGMVVEHNGGKETKRMKRN LSRRKGVWPKGIIPYTIDGTKIGRQLTMIAVLKVDDWLVASLEYLRRCTSTIGMAKAYQGISLPNGCMNQKNEVVMEAVD PYQRFLISARKPNTLQFYDIQEVTGMYNCTDCGGIHDVEVGKEVQIQTPNYPETYPVNKTCRWLFRGKAGYHLRMTIDDM QLPYNNLDLCYHWMEIQYNNLGHPGIKRCGEAAGLTFTAARDSPTLMMVGFDSKAHPSRTPEKGFSYRVYLLSDYCINDP CHFGKCIETDIGYKCVCESGFAGDHCEQADVGRSFSCDFDNDMPCLFKNTADGDQFDWVVNKYTSVYKDIGVTYARTGDG YLYANMFTHRKSNDVAHFITRFPLKAEDRCLSFFYNMNGQHSSTLSVKSKSSKSSSFDTIWIKHGGQGPNWHHAEVFLLT EVSENLELLFEVVKGNNSSLISLDNITLAPGSCHFNGIHDIVHVTTLRSWRQNLTEFGMTFEGIGWINFEVHACYAVLVQ LRTGSNSSGVHYNLHFGNRNNRFRAFSVTLNKYENGKKTINIIVFTPTTDCNSYKPFWFGWKDNKLQFGRGFVYGKDIIL SGNDPNLQDVKHVIVSSGVKAKWIFSKGNCVSGFGKCGDTGYCVIPEEVCDNINNCADGSDEKDCVFPACEASEFRCTYG RCYPGTVKCDGKTDCSDNSDELDCPIHLKPRRTLNLSQYGLHPNGSSNFKFSVKTCEEAVVKMWNRGTRLYEIGLGRGKN SRSTLFKAGSHPPLRHYGAVVDCEKFLPFHISWSGSSVQVGRGHELGTDVILELKDTVTSTIDEISVSSYSKDVFFNIEA ALPPCRTNEYRCGYGRCIVGAYRCDDITHCTDGSDEKDCPIHLKPRRTLNLSQYGLHPNGSSNFKFSVKTCEEAVVKMWN RGTRLYEIGLGRGKNSRSTLFKAGSHPPLRHYGAVVDCEKFLPFHISWSGSSVQVGRGHELGTDVILELKDTVTSTIDEI SVSSYSKDVFFNIEAALPPCRTNEYRCGYGRCIVGAYRCDDITHCTDGSDEKDCPIEVPKRTEDVISNHQYNITGMNWIN FEVQSCGDAFVKLLQEGNVMFGVLLGRGGNTWNSLINYVTEQEKHKSNTPVLDCNRYKQFWFSWSDGHVKVGQGLLKGNN LLLQLSYNSPVKIDDVQLQSYGNDNVFKIRQGNCFEGLFKCSERAECISLDKKCDSMSDCATTGGSDEHNCAIHIKPRTT INLSDYGLHPNGSSEFKFSVRTCEDAWIKLLNKGSRLYEIGLGRGKNSRSTLFKAGSNLPKRHYGAIVDCDKFLPFYITW SGSRVLVGRGHEIGESVILEIENTFTLKIDQISLGSHAKDVFFNIEAALPPCSSNEFRCGYGRCIAGAERCDGVVLHCTD GTDEKNCPILVPKLWKRRYIDLEPFGITGKGRSALIFSTDTCNTLWIGLMPDKHDTSSMYEISLARGNNDFIAIEKDGKE KKRVRSSILDCTPKELWITWKDGRIAVGEGTDITKNVVMEWTDDDPLDVNDIGLSSWHKEWTFQNIDL |
|