Gene
| Gene Model ID | pfu_aug2.0_366.1_20665 |
|---|---|
| Locus | scaffold366.1 : 47166 ... 67960 : + |
| To GenomeBrowser | scaffold366.1:47166..67960 |
| Genes list of scaffold | scaffold366.1 |
| Synonym | pfu_aug1.0_225167.1_35845 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dead-box protein | GO:0003676 GO:0004386 GO:0005524 GO:0008152 GO:0008270 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_366.1_20665.t1 | 3 | 1 | zf-CCHC | 103 | 119 | 1.4e-21 | 75.2 | 1.8e-10 | 3.9e-07 | 29.7 |
| pfu_aug2.0_366.1_20665.t1 | 3 | 1 | zf-CCHC_3 | 104 | 121 | 9.7e-11 | 41.2 | 1.3e-06 | 0.0027 | 17.3 |
| pfu_aug2.0_366.1_20665.t1 | 3 | 1 | zf-CCHC_2 | 104 | 120 | 1.2e-06 | 27.8 | 0.0022 | 4.7 | 6.7 |
| pfu_aug2.0_366.1_20665.t1 | 3 | 2 | zf-CCHC_3 | 127 | 146 | 9.7e-11 | 41.2 | 3.6e-06 | 0.0076 | 15.9 |
| pfu_aug2.0_366.1_20665.t1 | 3 | 2 | zf-CCHC | 128 | 144 | 1.4e-21 | 75.2 | 2.5e-10 | 5.3e-07 | 29.2 |
| pfu_aug2.0_366.1_20665.t1 | 3 | 2 | zf-CCHC_2 | 129 | 145 | 1.2e-06 | 27.8 | 4.3e-05 | 0.091 | 12.2 |
| pfu_aug2.0_366.1_20665.t1 | 3 | 3 | zf-CCHC_3 | 152 | 174 | 9.7e-11 | 41.2 | 1.2e-06 | 0.0026 | 17.4 |
| pfu_aug2.0_366.1_20665.t1 | 3 | 3 | zf-CCHC | 153 | 169 | 1.4e-21 | 75.2 | 3.6e-10 | 7.7e-07 | 28.7 |
| pfu_aug2.0_366.1_20665.t1 | 3 | 3 | zf-CCHC_2 | 154 | 171 | 1.2e-06 | 27.8 | 2.5e-05 | 0.054 | 13.0 |
| pfu_aug2.0_366.1_20665.t1 | 1 | 1 | DEAD | 246 | 424 | 0.0 | 164.8 | 0.0 | 0.0 | 164.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_366.1_20665.t1 | gi|585718526|ref|XP_006825896.1| | PREDICTED: probable ATP-dependent RNA helicase DDX4-like, partial [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_366.1_20665.t1 | gi|74096143|ref|NP_001027593.1| | DEAD-Box Protein [Ciona intestinalis] | 0.0 |
| pfu_aug2.0_366.1_20665.t1 | gi|699253606|ref|XP_009861178.1| | PREDICTED: DEAD-Box Protein isoform X3 [Ciona intestinalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_366.1_20665.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_366.1_20665.t1 atggcttatagaggaagaggaatcctgagaatagaaaggaatcaaagtgattttcaaagtccaggctcctcagatagaat caaagtgattttcaaagtccaggctcctcagatagaaatacagaaagcatggatggcggaagttccgggggttttggagg tggtagaggaggtagcagctctggaagaggtggaggatttgggggcggtagaggaggaggcagtggaggatttggcagag gaggaggaggtggggatgcagactcaactttcggaggaggcttcggaggaggcgataaacctgccaggatgcagaaaatg tggagaagaagggcattttgcccgtgaatgtcccaatgctgaaaaaagcagtaaaggttcaggctgccataaatgtggag aagaagggcattttgcccgtgaatgtcccaatgctgaaaaaagcggcaaaggctccggctgtcacaaatgtggagaagag ggacacttcgccagagagtgtcctaaagcacctgctgaaggagaccgaccagcaccatacgtacctcctgctccatcaga ggatgagaacgagattttctgtgcaatgcaaaagggaattaactttgataaatatgacaagattccagtagaagtcactg gtggagatccacctccctgcataaagaactttgaggaggcaggcttggcagattccttccttactaacgttaaaaaggcc aatttcgagaagcctactccagtacagaaatattctattccgataatcatggcgggtagagaccttatggcctgtgcaca gactggatcgggtaaaacggccgcgttcttactgcctgtactgacaggaatgacaaaatctggattgaacagtagtagct tctcccaggtccaagaaccacaagccttggtgattgctcctacaagagagttggctgtacagatctatatggacgccagg aagtttgcccacggcaccatgctacggcctgtggtactgtatggagggacctctgtaggctatcagatacggcaggtcga acagggaaccaatatactggtgggcacaccaggaaggttgatggatatcattggcaaaggaaagataagcttggaaaaga tcaagtatctgatcctagatgaagcagacagaatgctcgacatgggatttggtccagaaattaagaagattgtgactgag atgggaatgccgtcaaagacagacagacagaccctgatgttcagtgctaccttccccaaggaagtacaggagatagctgc ggagtacctgaaccactacctgttccttactgtagggagggtaggtggagcatgtactgatgtcacacagactgtgtttg aggtagacagacaggaaaaaagacagaggctctcagatatacttacagaatcaggatctgacaaaaccttagtttttgtg gaacaaaaaagaaatgctgatttcttggcgtctttcctgtctcagagtggatttccaacgacgagtatacatgggtaa |
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Protein
| Protein ID | pfu_aug2.0_366.1_20665.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_366.1_20665.t1 MAYRGRGILRIERNQSDFQSPGSSDRIKVIFKVQAPQIEIQKAWMAEVPGVLEVVEEVAALEEVEDLGAVEEEAVEDLAE EEEVGMQTQLSEEASEEAINLPGCRKCGEEGHFARECPNAEKSSKGSGCHKCGEEGHFARECPNAEKSGKGSGCHKCGEE GHFARECPKAPAEGDRPAPYVPPAPSEDENEIFCAMQKGINFDKYDKIPVEVTGGDPPPCIKNFEEAGLADSFLTNVKKA NFEKPTPVQKYSIPIIMAGRDLMACAQTGSGKTAAFLLPVLTGMTKSGLNSSSFSQVQEPQALVIAPTRELAVQIYMDAR KFAHGTMLRPVVLYGGTSVGYQIRQVEQGTNILVGTPGRLMDIIGKGKISLEKIKYLILDEADRMLDMGFGPEIKKIVTE MGMPSKTDRQTLMFSATFPKEVQEIAAEYLNHYLFLTVGRVGGACTDVTQTVFEVDRQEKRQRLSDILTESGSDKTLVFV EQKRNADFLASFLSQSGFPTTSIHG |
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