Gene
| Gene Model ID | pfu_aug2.0_366.1_20666 |
|---|---|
| Locus | scaffold366.1 : 68616 ... 73804 : + |
| To GenomeBrowser | scaffold366.1:68616..73804 |
| Genes list of scaffold | scaffold366.1 |
| Synonym | pfu_aug1.0_13522.1_61224 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| vasa-like protein | GO:0003676 GO:0004386 GO:0005524 GO:0007275 GO:0008152 GO:0008270 GO:0033391 GO:0048471 GO:0071546 GO:0071547 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_366.1_20666.t1 | 1 | 1 | Helicase_C | 12 | 74 | 1.2e-23 | 82.7 | 1.1e-27 | 1.7e-23 | 82.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_366.1_20666.t1 | gi|524912723|ref|XP_005111202.1| | PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Aplysia californica] | 1.0e-38 |
| pfu_aug2.0_366.1_20666.t1 | gi|226246544|ref|NP_001139665.1| | vasa protein [Strongylocentrotus purpuratus] | 9.0e-38 |
| pfu_aug2.0_366.1_20666.t1 | gi|260812834|ref|XP_002601125.1| | hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae] | 2.0e-37 |
Transcript
| Transcript ID | pfu_aug2.0_366.1_20666.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_366.1_20666.t1 atgtgttctgatataatacttaaccattacagagatcggttacaagcagaacgtgaggaggcattgaaggattttaagac tggcaaggctccgatattaatagccacatctgtagccgctagaggtttagatatcccacttgttaaacatgtcataaact atgatctgccaaacagaattgaggagtatgtccacagaattggtagaactggacgttgtggtaatctgggcaaggccaca agtttctactcccacgatacagacagtgacatggctaaaccactcgtacgagttctggctgatcaaagggagatgcataa aggtgagggaggtttcccccttggagcgggtggtgggtcagtcaccatcaacgcaggaggtacggctaacgatgatgaag agtgctgggactag |
|
Protein
| Protein ID | pfu_aug2.0_366.1_20666.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_366.1_20666.t1 MCSDIILNHYRDRLQAEREEALKDFKTGKAPILIATSVAARGLDIPLVKHVINYDLPNRIEEYVHRIGRTGRCGNLGKAT SFYSHDTDSDMAKPLVRVLADQREMHKGEGGFPLGAGGGSVTINAGGTANDDEECWD |
|