Gene
| Gene Model ID | pfu_aug2.0_366.1_20669 |
|---|---|
| Locus | scaffold366.1 : 136989 ... 163063 : + |
| To GenomeBrowser | scaffold366.1:136989..163063 |
| Genes list of scaffold | scaffold366.1 |
| Synonym | pfu_aug1.0_2437.1_22985 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| aspartate--trna mitochondrial isoform x2 | GO:0016874 GO:0044238 GO:0044260 GO:0044424 GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_366.1_20669.t1 | 2 | 1 | tRNA_anti-codon | 73 | 143 | 3.0e-09 | 36.6 | 5.2e-12 | 1.5e-08 | 34.3 |
| pfu_aug2.0_366.1_20669.t1 | 1 | 1 | tRNA-synt_2 | 142 | 514 | 0.0 | 313.2 | 0.0 | 0.0 | 312.9 |
| pfu_aug2.0_366.1_20669.t1 | 2 | 2 | tRNA_anti-codon | 331 | 359 | 3.0e-09 | 36.6 | 0.73 | 2200.0 | -1.4 |
| pfu_aug2.0_366.1_20669.t1 | 2 | 1 | GAD | 336 | 349 | 2.3e-09 | 37.2 | 0.25 | 730.0 | 0.4 |
| pfu_aug2.0_366.1_20669.t1 | 2 | 2 | GAD | 350 | 401 | 2.3e-09 | 37.2 | 4.7e-12 | 1.4e-08 | 34.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_366.1_20669.t1 | gi|557001154|ref|XP_006003178.1| | PREDICTED: aspartate--tRNA ligase, mitochondrial isoform X2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_366.1_20669.t1 | gi|512837994|ref|XP_004914078.1| | 0.0 | |
| pfu_aug2.0_366.1_20669.t1 | gi|557001157|ref|XP_006003179.1| | PREDICTED: aspartate--tRNA ligase, mitochondrial isoform X3 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_366.1_20669.t1 | gi|395530845|ref|XP_003767497.1| | PREDICTED: aspartate--tRNA ligase, mitochondrial [Sarcophilus harrisii] | 0.0 |
| pfu_aug2.0_366.1_20669.t1 | gi|512837990|ref|XP_002931512.2| | PREDICTED: aspartate--tRNA ligase, mitochondrial isoform X1 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_366.1_20669.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_366.1_20669.t1 atgtttttatgcccatcctgtctacgatcattgactccgcttattagagggatttccaaactgaaaccaagcagtaggac acaaaaaataccaaaccgtccttcagacagtgtgtctttgagaggtttacactctaacagcataaatgattattcgagtt ttactaagaggacacatgggtgtggtagaataacatcatcagatatagataagactgtccgtttatatggctggctccag tataacagaatggccggctcatcttgtcagttcctcattctacgtgactggacagggatagtacaagtcgctgtaccaca aaatatgataacagatgaaatactatcgttgtcaacagaaagtgtacttgaagtatcaggaaaagtacagaaaagacccg agggacaagaaaacaaaagtaaagaagatctgagattgaaatatcgctaccttgatcttagacgacaagatctacagagg aacctgagattacgatcagaagtcatcatgaaaatcagggaatacctatgtgggcatggttttgtagatgtggaaacacc aacactattcaggagaactcctggaggtgctaaggagtttgtggtacctagtcattaccctggtcaattctacagcctac cacaaagtcctcaacaatttaagcagttattgatggtcgggggtttagacagatatttccaaatagccaggtgttatcgt gatgaaagtatcaaaacagatagacaaccagaattcactcaggtagatatagagctttcttttaccactcaagaagaggt gcgacacctagtggaggaattgatcaatcacagctggcctgtagacaaagggcagataactccaccattccctgttatta cttatgaacaagccatgaatgactatgggatcgataaacctgacacgaggtttgatttaaagttagtagatatatctgag gagaccagagggagtggatttaagttatttgatgatatacttacaaaagagcatggaaaagttgtggcaatttgcctacc aaagacaaagaaaccagcgataataaaggttgataaaggtaaatgggaatcgccattaagtaaacatctgtcagaagagg ttaaagaaaaacttaacaagaagttacagataggagatggtgacttggtcttcatggcagctggagaaaattatacacct aatgagattttgggaaggctcaggttggaagctgctaaaatattggataaaaaaggtatatatgaagtgaagttacagga tcctactatacaccattttctgtgggtgatagattttcccatgtttttacctaaggaggatccagaggtgggtggcagtg aggtagagtctgctcatcatccctttacagcccctcacccagaggatcagcatctgatatatacacaccctatgaaggta cgtagccagcattatgacttggtactaaacgggaatgaaatcggtggaggctcaatcagaattcataactcagaattaca acgctacgtcatagagaatatactgaagttgtcagttcctatcgggaatgataacaaaaccagcagaattcttcaacatt ttaatctataa |
|
Protein
| Protein ID | pfu_aug2.0_366.1_20669.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_366.1_20669.t1 MFLCPSCLRSLTPLIRGISKLKPSSRTQKIPNRPSDSVSLRGLHSNSINDYSSFTKRTHGCGRITSSDIDKTVRLYGWLQ YNRMAGSSCQFLILRDWTGIVQVAVPQNMITDEILSLSTESVLEVSGKVQKRPEGQENKSKEDLRLKYRYLDLRRQDLQR NLRLRSEVIMKIREYLCGHGFVDVETPTLFRRTPGGAKEFVVPSHYPGQFYSLPQSPQQFKQLLMVGGLDRYFQIARCYR DESIKTDRQPEFTQVDIELSFTTQEEVRHLVEELINHSWPVDKGQITPPFPVITYEQAMNDYGIDKPDTRFDLKLVDISE ETRGSGFKLFDDILTKEHGKVVAICLPKTKKPAIIKVDKGKWESPLSKHLSEEVKEKLNKKLQIGDGDLVFMAAGENYTP NEILGRLRLEAAKILDKKGIYEVKLQDPTIHHFLWVIDFPMFLPKEDPEVGGSEVESAHHPFTAPHPEDQHLIYTHPMKV RSQHYDLVLNGNEIGGGSIRIHNSELQRYVIENILKLSVPIGNDNKTSRILQHFNL |
|