Gene
| Gene Model ID | pfu_aug2.0_366.1_20671 |
|---|---|
| Locus | scaffold366.1 : 179676 ... 189948 : - |
| To GenomeBrowser | scaffold366.1:179676..189948 |
| Genes list of scaffold | scaffold366.1 |
| Synonym | pfu_aug1.0_12287.1_61023 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_366.1_20671.t2 | 3 | 1 | DUF4200 | 34 | 139 | 3.8e-21 | 75.3 | 5.2e-25 | 3.8e-21 | 75.3 |
| pfu_aug2.0_366.1_20671.t2 | 3 | 2 | DUF4200 | 137 | 162 | 3.8e-21 | 75.3 | 0.0059 | 44.0 | 4.0 |
| pfu_aug2.0_366.1_20671.t2 | 3 | 3 | DUF4200 | 183 | 227 | 3.8e-21 | 75.3 | 0.021 | 150.0 | 2.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_366.1_20671.t2 | gi|198434917|ref|XP_002128459.1| | PREDICTED: coiled-coil domain-containing protein 42 homolog [Ciona intestinalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_366.1_20671.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_366.1_20671.t1 atgccagagcgtgaggatgaccatctcacgccggccacaaggttactggaaaaaaggagggagatgcaggaggtggagca ggcgctggcagcacagaaggaagaattccaaatgaagatggaaagcttgcaacaaagaagggaggagttagaaagaaaag aatgtcaacttaaagaatctttactgaagtttgatcatttcttgaaggaaaatgactcaaagaaagctagggcattaaag aaagcggaagatgagagagaatccaagaaacaaaaagataaagaaattgataaggacacaaaaaatcaggaaattataga gaaacaaagacaaaatcttctacggtatattgaggagaaggacaatgagattttatcattcaacaatgagttatctggtt tacaaacacggcttgacactgcacaaagtgaagctgtcaaatgggaaaatgaatggacaagaatcaaaaatacctcagca gaaaaaacattggagcttggaagaataaaaatggctgcccataatttgtaccagctggtaaagagacatcagaaacaggc ggctgatgaagaagataccacagaacagttaaatcagattcgcatgttcatgcaggatctgacaacaatcacaaacgaaa ttcgccgtatggaaatgtcaggggcgtctatagccccgccctcctcaagctag |
|
| Transcript ID | pfu_aug2.0_366.1_20671.t2 |
| Definition | - |
>pfu_aug2.0_366.1_20671.t2 atgactgtgaatctcgaagaatatttccgaacaaccttcgaggataaactcctcgttaaaatgccagagcgtgaggatga ccatctcacgccggccacaaggttactggaaaaaaggagggagatgcaggaggtggagcaggcgctggcagcacagaagg aagaattccaaatgaagatggaaagcttgcaacaaagaagggaggagttagaaagaaaagaatgtcaacttaaagaatct ttactgaagtttgatcatttcttgaaggaaaatgactcaaagaaagctagggcattaaagaaagcggaagatgagagaga atccaagaaacaaaaagataaagaaattgataaggacacaaaaaatcaggaaattatagagaaacaaagacaaaatcttc tacggtatattgaggagaaggacaatgagattttatcattcaacaatgagttatctggtttacaaacacggcttgacact gcacaaagtgaagctgtcaaatgggaaaatgaatggacaagaatcaaaaatacctcagcagaaaaaacattggagcttgg aagaataaaaatggctgcccataatttgtaccagctggtaaagagacatcagaaacaggcggctgatgaagaagatacca cagaacagttaaatcagattcaaatgttcctggaggacctatcagacatagtgcgggatctgaagcgatcagacacgttc acctccacctacatgccgccatcatccagctaa |
|
Protein
| Protein ID | pfu_aug2.0_366.1_20671.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_366.1_20671.t1 MPEREDDHLTPATRLLEKRREMQEVEQALAAQKEEFQMKMESLQQRREELERKECQLKESLLKFDHFLKENDSKKARALK KAEDERESKKQKDKEIDKDTKNQEIIEKQRQNLLRYIEEKDNEILSFNNELSGLQTRLDTAQSEAVKWENEWTRIKNTSA EKTLELGRIKMAAHNLYQLVKRHQKQAADEEDTTEQLNQIRMFMQDLTTITNEIRRMEMSGASIAPPSSS |
|
| Protein ID | pfu_aug2.0_366.1_20671.t2 |
| Definition | - |
>pfu_aug2.0_366.1_20671.t2 MTVNLEEYFRTTFEDKLLVKMPEREDDHLTPATRLLEKRREMQEVEQALAAQKEEFQMKMESLQQRREELERKECQLKES LLKFDHFLKENDSKKARALKKAEDERESKKQKDKEIDKDTKNQEIIEKQRQNLLRYIEEKDNEILSFNNELSGLQTRLDT AQSEAVKWENEWTRIKNTSAEKTLELGRIKMAAHNLYQLVKRHQKQAADEEDTTEQLNQIQMFLEDLSDIVRDLKRSDTF TSTYMPPSSS |
|