Gene
| Gene Model ID | pfu_aug2.0_37.1_23296 |
|---|---|
| Locus | scaffold37.1 : 220978 ... 235955 : - |
| To GenomeBrowser | scaffold37.1:220978..235955 |
| Genes list of scaffold | scaffold37.1 |
| Synonym | pfu_aug1.0_5396.1_67237 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_37.1_23296.t1 | 5 | 1 | dsrm | 171 | 235 | 0.0 | 161.9 | 1.1e-15 | 8.4e-12 | 45.4 |
| pfu_aug2.0_37.1_23296.t1 | 5 | 2 | dsrm | 315 | 350 | 0.0 | 161.9 | 1.3e-08 | 9.5e-05 | 22.8 |
| pfu_aug2.0_37.1_23296.t1 | 5 | 3 | dsrm | 383 | 446 | 0.0 | 161.9 | 3.5e-15 | 2.6e-11 | 43.9 |
| pfu_aug2.0_37.1_23296.t1 | 5 | 4 | dsrm | 490 | 554 | 0.0 | 161.9 | 6.2e-14 | 4.6e-10 | 39.9 |
| pfu_aug2.0_37.1_23296.t1 | 5 | 5 | dsrm | 647 | 708 | 0.0 | 161.9 | 0.00093 | 6.9 | 7.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_37.1_23296.t1 | gi|325296829|ref|NP_001191656.1| | neuron-specific staufen [Aplysia californica] | 0.0 |
| pfu_aug2.0_37.1_23296.t1 | gi|325120999|ref|NP_001191404.1| | staufen [Aplysia californica] | 0.0 |
| pfu_aug2.0_37.1_23296.t1 | gi|755940163|ref|XP_011298018.1| | PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform X3 [Fopius arisanus] | 0.0 |
| pfu_aug2.0_37.1_23296.t1 | gi|755940154|ref|XP_011298015.1| | PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform X1 [Fopius arisanus] | 0.0 |
| pfu_aug2.0_37.1_23296.t1 | gi|665794944|ref|XP_008545196.1| | PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform X3 [Microplitis demolitor] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_37.1_23296.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_37.1_23296.t1 atgggcgtacaacaacagtatcaaccacaaatggcccatcctcaagtccaagtaaccaatcaacatatgacaatggggac acactcccaacaaaacagacagaagggaaacatgatgggggtaggcatcataaaaaattccaccccaaattcactgccaa ataatcaaatgatgccttcctccaactcgtacccatcaacacaacacagcgttgccggaatgcaccagatgaaccatacc aatgcagtcagtcaatcgtcagtgccgatttcaagtcaaaatggatcagtcagtgtttcggtagcaacatctaagcaaca cattgtagtaaccccaaatgatggtcagcaacagaccaatacgcaatcagcaacacagcagaatgcaacaacagatcaaa cgcaacccaacgctacagggaccgttttatccgatcaattatccacggaacaggaagacagcaatggatctgaagcttca caaggcttggcaaacacaaaagagaaaaccccaatgtgcttaattaatgagttagcccgatacaacaaaataatgcatca atacaccctagtagatgaacaaggccctgctcacaagaaggtcttctatgtccagcttaaactaggcgacagtgaggaat attctgctaatggacccagtatcaaaaaggcccagcatgccgcggccagccaggccctgcagaaaacctcctacactgcc cctcccccaaaacctcctaaagcacaacccaacttcaacacagagactatgggggatgggcagccagtcacacctactgt caagttaaatgctctggcaatgaaaagaggggagcaaacctactataaacccatagaaacccggacccctcagcagtatt accctcctcctaattacaactacagaggaatgtttaatcaaaggtatcactatcccagaattccacgtgtgttctacgtc tcccttaaagttggtgctagagagtttgtaggtgaaggtcccacacgacaagaggctcgacacgacgctgccaagaaagc gctaggtatactagagaaattaccagtgccgaatgaggaggaaaggaagatcgaatgcccagtagatttaccaactgacg cagaaaaagacaatctgaaatcagagatcagccttgtacatgagattgccttaaaaaggaaccttagtgttggatttgaa gtgactcgagagtctggtcctccccacatgaaaacctttgtaacatgctgtaaagttggagattatctaacagagtccga gggtaacagtaaaaaagtttccaaaaagaaagcagcggagatgatgctagaaaaacttaaagagttacctcccttgccac cgagtgtttcacgccttagaaacaaacctattgtaaaaaagaagaataaaaatctcatcaagcaacaagtacaaaaggca gatcctaactatggagtgggtataaatcccatcagtcgactcatacagatccagcaggctcagcagaagaaagaaccggt atataccctggtcactgagcgggggctgccacgacggagagaatttgttatacaggtacaagtagacgaccaggcttgca caggagtaggaccgaataaaaagttggccaaacggcatgcagcagaggccatgttgacgttgctaggttacaataaacct tcccctcagcccaccaaacctgccatcaaaacagctagtactcctgagggtagttcagagaaaaaagttaccttccagga gagtacagatgaatctggagaccaatcagctgatggtaaggcaggacgacaattaatgccaggattgttactattacccg actccaagtacacagggggccctatatatggacaaggacaaaatcatgtaggtgattatacagcatttgctaatgtttcc aaaagaccagaaattacacttagagaactggcgtcagctaacggcttagagattaagtttgatgaattccagtcacagac aaactcccagcagagtgagtacctgagtagagtgaccttgttattcaccccgcctcgtgtgttccacgggagtgggggaa acgctgaagcagcaagagacctggctgcccttgaagctctcaagtttctccatgagatgggaaaaggtgatggagaaagg atgtga |
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Protein
| Protein ID | pfu_aug2.0_37.1_23296.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_37.1_23296.t1 MGVQQQYQPQMAHPQVQVTNQHMTMGTHSQQNRQKGNMMGVGIIKNSTPNSLPNNQMMPSSNSYPSTQHSVAGMHQMNHT NAVSQSSVPISSQNGSVSVSVATSKQHIVVTPNDGQQQTNTQSATQQNATTDQTQPNATGTVLSDQLSTEQEDSNGSEAS QGLANTKEKTPMCLINELARYNKIMHQYTLVDEQGPAHKKVFYVQLKLGDSEEYSANGPSIKKAQHAAASQALQKTSYTA PPPKPPKAQPNFNTETMGDGQPVTPTVKLNALAMKRGEQTYYKPIETRTPQQYYPPPNYNYRGMFNQRYHYPRIPRVFYV SLKVGAREFVGEGPTRQEARHDAAKKALGILEKLPVPNEEERKIECPVDLPTDAEKDNLKSEISLVHEIALKRNLSVGFE VTRESGPPHMKTFVTCCKVGDYLTESEGNSKKVSKKKAAEMMLEKLKELPPLPPSVSRLRNKPIVKKKNKNLIKQQVQKA DPNYGVGINPISRLIQIQQAQQKKEPVYTLVTERGLPRRREFVIQVQVDDQACTGVGPNKKLAKRHAAEAMLTLLGYNKP SPQPTKPAIKTASTPEGSSEKKVTFQESTDESGDQSADGKAGRQLMPGLLLLPDSKYTGGPIYGQGQNHVGDYTAFANVS KRPEITLRELASANGLEIKFDEFQSQTNSQQSEYLSRVTLLFTPPRVFHGSGGNAEAARDLAALEALKFLHEMGKGDGER M |
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