Gene
| Gene Model ID | pfu_aug2.0_37.1_23298 |
|---|---|
| Locus | scaffold37.1 : 257339 ... 272785 : - |
| To GenomeBrowser | scaffold37.1:257339..272785 |
| Genes list of scaffold | scaffold37.1 |
| Synonym | pfu_aug1.0_2013.1_22831 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_37.1_23298.t1 | 3 | 1 | LRR_9 | 77 | 144 | 4.1e-06 | 26.4 | 3.6e-05 | 0.06 | 12.9 |
| pfu_aug2.0_37.1_23298.t1 | 2 | 1 | LRR_8 | 101 | 140 | 4.6e-09 | 35.9 | 0.00021 | 0.35 | 10.6 |
| pfu_aug2.0_37.1_23298.t1 | 5 | 1 | LRR_4 | 102 | 142 | 1.5e-10 | 40.4 | 3.6e-06 | 0.0059 | 16.2 |
| pfu_aug2.0_37.1_23298.t1 | 5 | 2 | LRR_4 | 157 | 195 | 1.5e-10 | 40.4 | 0.024 | 40.0 | 3.9 |
| pfu_aug2.0_37.1_23298.t1 | 2 | 2 | LRR_8 | 182 | 243 | 4.6e-09 | 35.9 | 4.5e-10 | 7.4e-07 | 28.8 |
| pfu_aug2.0_37.1_23298.t1 | 3 | 2 | LRR_9 | 204 | 245 | 4.1e-06 | 26.4 | 0.00035 | 0.57 | 9.7 |
| pfu_aug2.0_37.1_23298.t1 | 5 | 3 | LRR_4 | 207 | 244 | 1.5e-10 | 40.4 | 2.6e-08 | 4.3e-05 | 23.0 |
| pfu_aug2.0_37.1_23298.t1 | 5 | 4 | LRR_4 | 338 | 369 | 1.5e-10 | 40.4 | 0.14 | 230.0 | 1.5 |
| pfu_aug2.0_37.1_23298.t1 | 3 | 3 | LRR_9 | 341 | 414 | 4.1e-06 | 26.4 | 0.0069 | 11.0 | 5.4 |
| pfu_aug2.0_37.1_23298.t1 | 5 | 5 | LRR_4 | 387 | 398 | 1.5e-10 | 40.4 | 0.23 | 370.0 | 0.8 |
| pfu_aug2.0_37.1_23298.t1 | 7 | 1 | WD40 | 619 | 645 | 4.8e-34 | 115.0 | 0.0061 | 10.0 | 6.2 |
| pfu_aug2.0_37.1_23298.t1 | 7 | 2 | WD40 | 651 | 688 | 4.8e-34 | 115.0 | 9.7e-13 | 1.6e-09 | 37.2 |
| pfu_aug2.0_37.1_23298.t1 | 7 | 3 | WD40 | 693 | 725 | 4.8e-34 | 115.0 | 1.2e-09 | 2.0e-06 | 27.4 |
| pfu_aug2.0_37.1_23298.t1 | 7 | 4 | WD40 | 747 | 774 | 4.8e-34 | 115.0 | 0.00057 | 0.93 | 9.4 |
| pfu_aug2.0_37.1_23298.t1 | 7 | 5 | WD40 | 782 | 816 | 4.8e-34 | 115.0 | 1.4e-07 | 0.00023 | 20.9 |
| pfu_aug2.0_37.1_23298.t1 | 7 | 6 | WD40 | 833 | 852 | 4.8e-34 | 115.0 | 0.0017 | 2.8 | 7.9 |
| pfu_aug2.0_37.1_23298.t1 | 7 | 7 | WD40 | 861 | 889 | 4.8e-34 | 115.0 | 1.6e-05 | 0.027 | 14.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_37.1_23298.t1 | gi|749755992|ref|XP_011140499.1| | PREDICTED: pre-mRNA-processing factor 19 [Harpegnathos saltator] | 0.0 |
| pfu_aug2.0_37.1_23298.t1 | gi|759081735|ref|XP_011350730.1| | PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing factor 19 [Cerapachys biroi] | 0.0 |
| pfu_aug2.0_37.1_23298.t1 | gi|746852067|ref|XP_011056574.1| | PREDICTED: pre-mRNA-processing factor 19 [Acromyrmex echinatior] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_37.1_23298.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_37.1_23298.t1 atgatcaacatggatgacggacaaaccaagaaaaatgtggctttcagcgtgatgcttcccgcgaacaacagacgacgaaa aagaatcaggaagcgttctttcacagaagccttgagggaaaaatactgcatcaatgacccaaataaaatgtacacatcgg gatttgtagttaacatctttgtgacagggaaacccaaggctaatggttcagacgcagagctcgcatatttgagaaatgtg gtgctgaatgattgctcagtgggacatgcaggattgcccaacgaaggtttggtgaacatttgtccgaacgtggttgattt ggacctgtcaagtaactgtctgtcaaactggaaagatgctctggaaatcctgtctcatcttaaatgtctcaaatttgtca acctggcaagaaatccactaaaaaactctgacaatgtcctacagtcttggagtagcgtattaccagaggttgagaatctt gtcctgaacgacactggtataacgtggcaagaggtcatattggtggccaaacacatacctgtactcaaagaactccatat ttgcggcaatgattatgaggaggttactgatgatggtcagctgaatcaacattttagaaatttacattgtctgcgactga ataataacaaaatccaaaggtggaacgaagtttggaagttaaaacatttaccagagcttgaatctctcattctatctggg aatccactgaaacatattttctatgaaaatggtgatgaatgtgaaaattgtgaaggtatggaagacaataagggtcaaaa tattacaaatacaaacaagtcaacagaagaggcaattgatgaaattgttgatgttctcgtatcaaggacatttaagaaaa tcgaagaaagctttcattccactaactcttcaaatgaaacatgtgaagatccttcaaaatctacagacatgtcaaagaag aaagaagataactgtgactcaaagaagagagaagatgtaaaagccttttccaaattaagattgttgtgcgtgagtgagac aaagcttaacgactgggcacatatgatggagttagggaaatacccacagctcgagtctgtaagattgaaggacattcccc tggcatcaaagcttacccaggatgacagaagaaaacttcacattgctagcttacccaaaataaagatattgaatggtagt gaaatttcttctactgagagagacaaggcagaaagacatttcatacggtattttatggacaagaaaaagaagccagagat atttcatcaactagaagccaagcatggtaaacttttgccactggttgatgtggacctacgacgatcctgttataaagaat ggataaatctgactctgaaatacaaaaatcaggaagtgacggagaaagtacaggctaaggatgctgtgggcaaactcagg ctattagctgcagacaaatttaatttatatgcaagtgtgaagatgttaaagctgtttcactcaccttgtggtccatgtca tcgagagggggaagaactggaactccaggagctgatccgacgaacagaatcactccctatgagtcgctttgacattatgg atggagacgtgatatatgtagatggtggggaatcccctgctcaacagaatgccccagaaggttcactttgtagacaggca cttgaaaagaagacaagctcacccacagaagtgactgatattcttcaaaagattcaggacagtaaaaagagaaagagaga agattcagagtgtgagatctgtattacagaggacaatttgagacattttagacatatggcttcatatgctgggcttcacg atgctcaagacccggggatattatctatggatgtcaatccaagaaattcatcaaaaattgtcacaggaggaaaagacaac tgtgcagtagtattcagtaaagacctaggtcaggtcatggtcatccttcaaggtcacaaagacgaggtcaaccatgttgt atatcatccagaagaggatgtagtggtcacatcatcagctgactgcacggtacgtgtttgggatgcacggaaagccaggt gcttacatacgatagatgctcacaatggaccaatcagagggctcgatttacatccatcaggagactatgtccttacttcc tctatggacaagactttttcattttctgaccttagagaaggaaaagttctcctcaattttccagctaaagatgattcaca agaatgtagttgtgttgacttccatccacaaggtatgacctttgcaggcggtactttgaaatctaacattgatatttggg atctaagatctcgagatattacctccacactcactgatttggaaggatctataacggacctttgctacacggaagatggt acatatttggcctccagttcagatggatcatgtgtcaaaatctgggacacccgaaatatgagttgtgttcacactatcga ccttcctgatcaatatattgtgaactcactgtgctttgataagaatggtgattttctggccattggaggaagtgacatca gattttactcgtgtaagacctggaaagaactcagagtgttcacagagcattcttctattatcacacgtgtcaagtttgct gatgatgcatcatttttagcctcgacaaacgtccgtggatctttgaaattttacagcgaatcatag |
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Protein
| Protein ID | pfu_aug2.0_37.1_23298.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_37.1_23298.t1 MINMDDGQTKKNVAFSVMLPANNRRRKRIRKRSFTEALREKYCINDPNKMYTSGFVVNIFVTGKPKANGSDAELAYLRNV VLNDCSVGHAGLPNEGLVNICPNVVDLDLSSNCLSNWKDALEILSHLKCLKFVNLARNPLKNSDNVLQSWSSVLPEVENL VLNDTGITWQEVILVAKHIPVLKELHICGNDYEEVTDDGQLNQHFRNLHCLRLNNNKIQRWNEVWKLKHLPELESLILSG NPLKHIFYENGDECENCEGMEDNKGQNITNTNKSTEEAIDEIVDVLVSRTFKKIEESFHSTNSSNETCEDPSKSTDMSKK KEDNCDSKKREDVKAFSKLRLLCVSETKLNDWAHMMELGKYPQLESVRLKDIPLASKLTQDDRRKLHIASLPKIKILNGS EISSTERDKAERHFIRYFMDKKKKPEIFHQLEAKHGKLLPLVDVDLRRSCYKEWINLTLKYKNQEVTEKVQAKDAVGKLR LLAADKFNLYASVKMLKLFHSPCGPCHREGEELELQELIRRTESLPMSRFDIMDGDVIYVDGGESPAQQNAPEGSLCRQA LEKKTSSPTEVTDILQKIQDSKKRKREDSECEICITEDNLRHFRHMASYAGLHDAQDPGILSMDVNPRNSSKIVTGGKDN CAVVFSKDLGQVMVILQGHKDEVNHVVYHPEEDVVVTSSADCTVRVWDARKARCLHTIDAHNGPIRGLDLHPSGDYVLTS SMDKTFSFSDLREGKVLLNFPAKDDSQECSCVDFHPQGMTFAGGTLKSNIDIWDLRSRDITSTLTDLEGSITDLCYTEDG TYLASSSDGSCVKIWDTRNMSCVHTIDLPDQYIVNSLCFDKNGDFLAIGGSDIRFYSCKTWKELRVFTEHSSIITRVKFA DDASFLASTNVRGSLKFYSES |
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