Gene
| Gene Model ID | pfu_aug2.0_37.1_23302 |
|---|---|
| Locus | scaffold37.1 : 340487 ... 373316 : + |
| To GenomeBrowser | scaffold37.1:340487..373316 |
| Genes list of scaffold | scaffold37.1 |
| Synonym | pfu_aug1.0_2013.1_22838 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_37.1_23302.t1 | 8 | 1 | PUF | 711 | 743 | 0.0 | 225.2 | 1.5e-10 | 2.2e-06 | 26.8 |
| pfu_aug2.0_37.1_23302.t1 | 8 | 2 | PUF | 747 | 777 | 0.0 | 225.2 | 3.8e-11 | 5.6e-07 | 28.6 |
| pfu_aug2.0_37.1_23302.t1 | 8 | 3 | PUF | 783 | 810 | 0.0 | 225.2 | 6.1e-10 | 9.0e-06 | 24.8 |
| pfu_aug2.0_37.1_23302.t1 | 8 | 4 | PUF | 819 | 852 | 0.0 | 225.2 | 1.0e-12 | 1.5e-08 | 33.6 |
| pfu_aug2.0_37.1_23302.t1 | 8 | 5 | PUF | 855 | 887 | 0.0 | 225.2 | 9.7e-14 | 1.4e-09 | 36.8 |
| pfu_aug2.0_37.1_23302.t1 | 8 | 6 | PUF | 898 | 923 | 0.0 | 225.2 | 6.7e-11 | 1.0e-06 | 27.9 |
| pfu_aug2.0_37.1_23302.t1 | 8 | 7 | PUF | 927 | 953 | 0.0 | 225.2 | 2.2e-07 | 0.0033 | 16.8 |
| pfu_aug2.0_37.1_23302.t1 | 8 | 8 | PUF | 974 | 1002 | 0.0 | 225.2 | 4.0e-12 | 5.9e-08 | 31.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_37.1_23302.t1 | gi|524911068|ref|XP_005110404.1| | PREDICTED: pumilio homolog 2-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_37.1_23302.t1 | gi|524911070|ref|XP_005110405.1| | PREDICTED: pumilio homolog 2-like isoform X4 [Aplysia californica] | 0.0 |
| pfu_aug2.0_37.1_23302.t1 | gi|524911064|ref|XP_005110402.1| | PREDICTED: pumilio homolog 2-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_37.1_23302.t1 | gi|524911066|ref|XP_005110403.1| | PREDICTED: pumilio homolog 2-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_37.1_23302.t1 | gi|632977143|ref|XP_007905182.1| | PREDICTED: pumilio homolog 2 isoform X5 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_37.1_23302.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_37.1_23302.t1 atggaccaagtctcttggaacggcggtcaagctaaccagagattgatgaatggggatatggcgggtaatcagacgaaaca atccagcaatttttctggaagtcggtcacaagacgatgcgactgtgggctactttttccaaaggccccaatctgacactg aaatcaacatttacccaaataaacagagatgggcaataggggatgacagcattctggaacagtcaagaaatgtgacatct gttcaggacctagagagggacttccatgctatgtccatggggagagagtcaatgcatcatggtaaaaagttttgggaggt gggtgatgccccaaaacatggcgaccatggaaagcaaatgtttgcaggaaatccttggatgggaggaagagaggatgcat ggggcaacccaactgaatctggagctgtaggtttggacatggtagagtatgtcttgagtggaggatcgccacacggaaag gaactagatgccaggctcagaatgaaaagtggaccttacgtaaggaaatttaaggatggtggaatggatggacatcaaga gaagaaaagtaaaacaccatcaccgtttgagggacatgatggagacaggggagaggacaaaggagaaaatatgccaacaa acggcctgatgcagaatggaatagatgaagaaccctatagacgtggaagccgccaaaactcgccgagtaacgatgacaaa ctcgcccagatgggaggcatggacatgcagaaactggcagccattaataatctcaagcctgacggagaattcatggacaa ccatcaaggtcatttccaaggaccaggatttcatctagatgccccacccccttttgatcctgttggcatagatcctgtcc agtttgactacaacaatatagctccaccctctatggacagtccaaactttaataacatggactataaccagcaacagctt cttcagcgtcaacaacagccaatagcagttcttactcaacaacagtatgctctggccgcacaacaacaacagcttggact tactccaactgggctaccagctccatatgtcataagccaggatccttatgctgttggtatacccatagcaggacctgcag tgatccaccctcagtattatggagtccaaggtccatggggtatatatccagctaatctcatccaacaacaaggtcagcac acgccgcagggattgacgcaacaacaacaacagcaacagcaacaacaacagatgatgaggagccagtctggtcgtcctct tacaccacaacaaaatgacaacatggcacaacagaacatgcaggctcctgccctacagacacctaatccacagtatcaga ttcttgcaccagcttactatgatcagaatggccaattagtgatgggcaatcctcggggactgggcacgcctgtacgtttg gtatctcctgcccctgtcctagtcagtgccactgccaatcaacaaggtggggctttaggaaatagccctctacgtctcct aaccacacagggccaacaaatgcctaccactccaccagtcaatttctccagtaacaacaattctaataatcaaaataaca tggggtataatacacctagcagtagtctgggattctctcaagtctcctctagtctcttcagtcttaaccaacccagtaac ttcaacaattcttcaactaaccagtcactagattcgggtcaaagacgggactcgttagattataaacagcgtcagccact tccccctctgaatcagttctacggatctatgggctccatgggcagtatgtctgcctcacccgctggacccatgggcttag tacaaactggacaaagtatgacacccccaccttcactctctggatcttcatcaaatctatcattaggcatgtcaggaggt aacaggatgtacagtgcagctcctggggccgaggctaaattcagaaacggtccgatgggcaccagtaatggtttcttctc tggaagctctctcttcccaaacagaacgctagctactagaagtgccagtcttacaaaagaagttacaggtagaagtcgac ttcttgaagatttcagaaataatcgcataccaaacctccagcttaaagacctcaccaatcatgtagtggaattttcacag gatcaacatgggtctagattcattcaacagaagttggagagagcatcatcacaagagaagtctatggttttcaacgaaat tctggcctctgcatatcaattaatgacggacgtgttcggaaactatgtaatccagaaattctttgaatttggtgcgacgg atcagaaacagaccttagcccagaggttgagaggtcacgtattacagttagctctacagatgtatggatgtagggtaata cagaaagccctagaaactattccacaggaaatgcaggtggaaattgtcaaggaacttgacggtcatgtgttaaaatgtgt aaaggaccaaaatggaaaccatgttgtacagaagtgtattgaatgtgtcgaccctgtccatcttcagttcattattgatg catttaaaggacaggtacttaatttgtccacccacccatatggctgccgagtgattcagagaattctggagcattgtact aaagatcagacaactcctgttttggaggaacttcatcaagctaccgaacgcttggtacaggaccaatacggaaactatgt tatacagcacgtgctggaacacggacaaccggaggataaaagtaaaattgtcgcagaactacgaggaaaagtactcatac tcagccagcataaatttgcaagtaatgtggtggagaaatgtgtatcccattcatcacgagcagagaaagccatgctggta gaggaggtctgcaatatgagtgacgggccacacagtgccttgtatacgatgatgaaggaccagtttgctaattacgttgt tcagaaaatgattgacgttgccgagccaactcaaaggaagatcctcatgcacaagatccggcctcatattgccacgctcc gaaaatacacctacggcaaacatatccttgccaagctcgagaagttcttcatgaagaataactcggatctcggaccaatc ggaatgccccctaacggtgctctaccgtga |
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Protein
| Protein ID | pfu_aug2.0_37.1_23302.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_37.1_23302.t1 MDQVSWNGGQANQRLMNGDMAGNQTKQSSNFSGSRSQDDATVGYFFQRPQSDTEINIYPNKQRWAIGDDSILEQSRNVTS VQDLERDFHAMSMGRESMHHGKKFWEVGDAPKHGDHGKQMFAGNPWMGGREDAWGNPTESGAVGLDMVEYVLSGGSPHGK ELDARLRMKSGPYVRKFKDGGMDGHQEKKSKTPSPFEGHDGDRGEDKGENMPTNGLMQNGIDEEPYRRGSRQNSPSNDDK LAQMGGMDMQKLAAINNLKPDGEFMDNHQGHFQGPGFHLDAPPPFDPVGIDPVQFDYNNIAPPSMDSPNFNNMDYNQQQL LQRQQQPIAVLTQQQYALAAQQQQLGLTPTGLPAPYVISQDPYAVGIPIAGPAVIHPQYYGVQGPWGIYPANLIQQQGQH TPQGLTQQQQQQQQQQQMMRSQSGRPLTPQQNDNMAQQNMQAPALQTPNPQYQILAPAYYDQNGQLVMGNPRGLGTPVRL VSPAPVLVSATANQQGGALGNSPLRLLTTQGQQMPTTPPVNFSSNNNSNNQNNMGYNTPSSSLGFSQVSSSLFSLNQPSN FNNSSTNQSLDSGQRRDSLDYKQRQPLPPLNQFYGSMGSMGSMSASPAGPMGLVQTGQSMTPPPSLSGSSSNLSLGMSGG NRMYSAAPGAEAKFRNGPMGTSNGFFSGSSLFPNRTLATRSASLTKEVTGRSRLLEDFRNNRIPNLQLKDLTNHVVEFSQ DQHGSRFIQQKLERASSQEKSMVFNEILASAYQLMTDVFGNYVIQKFFEFGATDQKQTLAQRLRGHVLQLALQMYGCRVI QKALETIPQEMQVEIVKELDGHVLKCVKDQNGNHVVQKCIECVDPVHLQFIIDAFKGQVLNLSTHPYGCRVIQRILEHCT KDQTTPVLEELHQATERLVQDQYGNYVIQHVLEHGQPEDKSKIVAELRGKVLILSQHKFASNVVEKCVSHSSRAEKAMLV EEVCNMSDGPHSALYTMMKDQFANYVVQKMIDVAEPTQRKILMHKIRPHIATLRKYTYGKHILAKLEKFFMKNNSDLGPI GMPPNGALP |
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