Gene
| Gene Model ID | pfu_aug2.0_37.1_23311 |
|---|---|
| Locus | scaffold37.1 : 544675 ... 549289 : + |
| To GenomeBrowser | scaffold37.1:544675..549289 |
| Genes list of scaffold | scaffold37.1 |
| Synonym | pfu_aug1.0_46037.1_05345 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cytoplasmic 2 | GO:0005524 GO:0005737 GO:0005856 GO:0005886 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_37.1_23311.t2 | 1 | 1 | Actin | 1 | 360 | 0.0 | 521.2 | 0.0 | 0.0 | 521.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_37.1_23311.t2 | gi|560996035|ref|XP_006219873.1| | PREDICTED: actin-4-like [Vicugna pacos] | 0.0 |
| pfu_aug2.0_37.1_23311.t2 | gi|126272476|ref|XP_001379436.1| | PREDICTED: actin, cytoplasmic type 5-like [Monodelphis domestica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_37.1_23311.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_37.1_23311.t1 atgtgtgacgacgaagttgctgctttagttgttgacaatggctccggaatgtgcaaggccggtttcgccggagacgatgc ccccagggctgtgttcccatccattgtaggaagacccagacatcagggtgtcatggttggtatgggacagaaagacagct acgtcggagatgaagcccagagcaagagaggtatcctgaccctgaagtaccccattgaacacggtatcgtcacaaactgg gatgatatggagaagatctggcatcacactttctacaacgaactccgtgtcgcacccgaagagcaccccgtcctcctcac tgaagcccccctcaaccccaaggctaacagggaaaagatgacccaaatcatgtttgaaaccttcaacgcccccgccatgt acgtagccatccaggccgtgctctccctgtacgcttctggtcgtaccactggtatcgtgctcgactccggagacggtgtc acccacactgtaccaatctacgaaggttacgccctcccccacgccatcctccgtcttgacttggccggtcgtgatcttac tgactacctcatgaagatcctcaccgagcgtggttactcattcacaaccaccgccgaaagagaaatcgtcagagacatta aggaaaaactctgctacgtcgccctcgacttcgagcaggaaatggccaccgccgcttcctcctcctccctcgagaagagc tacgagcttcccgacggtcaggtcatcaccatcggtaacgagagattccgttgcccagaatccctattccagccatcctt cttgggtatggaatctgctggtatccatgaaaccacatacaacagcatcatgaaatgcgacgtcgacatccgtaaggatc tgtacgccaacactgtattgtccggcggtaccaccatgttcccaggtattgctgaccgtatgcagaaggaaatcaccgca cttgctccaagcacaatgaaaatcaagatcattgctccaccagagaggaaatactccgtctggatcggaggctccatcct tgcttccctctccaccttccaacagatgtggatcagcaagcaggaatacgatgaatccggtccatccattgtccacagga aatgcttctaa |
|
| Transcript ID | pfu_aug2.0_37.1_23311.t2 |
| Definition | - |
>pfu_aug2.0_37.1_23311.t2 atgtgcaaggccggtttcgccggagacgatgcccccagggctgtgttcccatccattgtaggaagacccagacatcaggg tgtcatggttggtatgggacagaaagacagctacgtcggagatgaagcccagagcaagagaggtatcctgaccctgaagt accccattgaacacggtatcgtcacaaactgggatgatatggagaagatctggcatcacactttctacaacgaactccgt gtcgcacccgaagagcaccccgtcctcctcactgaagcccccctcaaccccaaggctaacagggaaaagatgacccaaat catgtttgaaaccttcaacgcccccgccatgtacgtagccatccaggccgtgctctccctgtacgcttctggtcgtacca ctggtatcgtgctcgactccggagacggtgtcacccacactgtaccaatctacgaaggttacgccctcccccacgccatc ctccgtcttgacttggccggtcgtgatcttactgactacctcatgaagatcctcaccgagcgtggttactcattcacaac caccgccgaaagagaaatcgtcagagacattaaggaaaaactctgctacgtcgccctcgacttcgagcaggaaatggcca ccgccgcttcctcctcctccctcgagaagagctacgagcttcccgacggtcaggtcatcaccatcggtaacgagagattc cgttgcccagaatccctattccagccatccttcttgggtatggaatctgctggtatccatgaaaccacatacaacagcat catgaaatgcgacgtcgacatccgtaaggatctgtacgccaacactgtattgtccggcggtaccaccatgttcccaggta ttgctgaccgtatgcagaaggaaatcaccgcacttgctccaagcacaatgaaaatcaagatcattgctccaccagagagg aaatactccgtctggatcggaggctccatccttgcttccctctccaccttccaacagatgtggatcagcaagcaggaata cgatgaatccggtccatccattgtccacaggaaatgcttctaa |
|
Protein
| Protein ID | pfu_aug2.0_37.1_23311.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_37.1_23311.t1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGV THTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS YELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITA LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |
|
| Protein ID | pfu_aug2.0_37.1_23311.t2 |
| Definition | - |
>pfu_aug2.0_37.1_23311.t2 MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI LRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERF RCPESLFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPER KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |
|