Gene
Gene Model ID | pfu_aug2.0_37.1_23311 |
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Locus | scaffold37.1 : 544675 ... 549289 : + |
To GenomeBrowser | scaffold37.1:544675..549289 |
Genes list of scaffold | scaffold37.1 |
Synonym | pfu_aug1.0_46037.1_05345 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
cytoplasmic 2 | GO:0005524 GO:0005737 GO:0005856 GO:0005886 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_37.1_23311.t2 | 1 | 1 | Actin | 1 | 360 | 0.0 | 521.2 | 0.0 | 0.0 | 521.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_37.1_23311.t2 | gi|560996035|ref|XP_006219873.1| | PREDICTED: actin-4-like [Vicugna pacos] | 0.0 |
pfu_aug2.0_37.1_23311.t2 | gi|126272476|ref|XP_001379436.1| | PREDICTED: actin, cytoplasmic type 5-like [Monodelphis domestica] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_37.1_23311.t1 |
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Definition | - |
>pfu_aug2.0_37.1_23311.t1 atgtgtgacgacgaagttgctgctttagttgttgacaatggctccggaatgtgcaaggccggtttcgccggagacgatgc ccccagggctgtgttcccatccattgtaggaagacccagacatcagggtgtcatggttggtatgggacagaaagacagct acgtcggagatgaagcccagagcaagagaggtatcctgaccctgaagtaccccattgaacacggtatcgtcacaaactgg gatgatatggagaagatctggcatcacactttctacaacgaactccgtgtcgcacccgaagagcaccccgtcctcctcac tgaagcccccctcaaccccaaggctaacagggaaaagatgacccaaatcatgtttgaaaccttcaacgcccccgccatgt acgtagccatccaggccgtgctctccctgtacgcttctggtcgtaccactggtatcgtgctcgactccggagacggtgtc acccacactgtaccaatctacgaaggttacgccctcccccacgccatcctccgtcttgacttggccggtcgtgatcttac tgactacctcatgaagatcctcaccgagcgtggttactcattcacaaccaccgccgaaagagaaatcgtcagagacatta aggaaaaactctgctacgtcgccctcgacttcgagcaggaaatggccaccgccgcttcctcctcctccctcgagaagagc tacgagcttcccgacggtcaggtcatcaccatcggtaacgagagattccgttgcccagaatccctattccagccatcctt cttgggtatggaatctgctggtatccatgaaaccacatacaacagcatcatgaaatgcgacgtcgacatccgtaaggatc tgtacgccaacactgtattgtccggcggtaccaccatgttcccaggtattgctgaccgtatgcagaaggaaatcaccgca cttgctccaagcacaatgaaaatcaagatcattgctccaccagagaggaaatactccgtctggatcggaggctccatcct tgcttccctctccaccttccaacagatgtggatcagcaagcaggaatacgatgaatccggtccatccattgtccacagga aatgcttctaa |
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Transcript ID | pfu_aug2.0_37.1_23311.t2 |
Definition | - |
>pfu_aug2.0_37.1_23311.t2 atgtgcaaggccggtttcgccggagacgatgcccccagggctgtgttcccatccattgtaggaagacccagacatcaggg tgtcatggttggtatgggacagaaagacagctacgtcggagatgaagcccagagcaagagaggtatcctgaccctgaagt accccattgaacacggtatcgtcacaaactgggatgatatggagaagatctggcatcacactttctacaacgaactccgt gtcgcacccgaagagcaccccgtcctcctcactgaagcccccctcaaccccaaggctaacagggaaaagatgacccaaat catgtttgaaaccttcaacgcccccgccatgtacgtagccatccaggccgtgctctccctgtacgcttctggtcgtacca ctggtatcgtgctcgactccggagacggtgtcacccacactgtaccaatctacgaaggttacgccctcccccacgccatc ctccgtcttgacttggccggtcgtgatcttactgactacctcatgaagatcctcaccgagcgtggttactcattcacaac caccgccgaaagagaaatcgtcagagacattaaggaaaaactctgctacgtcgccctcgacttcgagcaggaaatggcca ccgccgcttcctcctcctccctcgagaagagctacgagcttcccgacggtcaggtcatcaccatcggtaacgagagattc cgttgcccagaatccctattccagccatccttcttgggtatggaatctgctggtatccatgaaaccacatacaacagcat catgaaatgcgacgtcgacatccgtaaggatctgtacgccaacactgtattgtccggcggtaccaccatgttcccaggta ttgctgaccgtatgcagaaggaaatcaccgcacttgctccaagcacaatgaaaatcaagatcattgctccaccagagagg aaatactccgtctggatcggaggctccatccttgcttccctctccaccttccaacagatgtggatcagcaagcaggaata cgatgaatccggtccatccattgtccacaggaaatgcttctaa |
Protein
Protein ID | pfu_aug2.0_37.1_23311.t1 |
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Definition | - |
>pfu_aug2.0_37.1_23311.t1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGV THTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS YELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITA LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |
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Protein ID | pfu_aug2.0_37.1_23311.t2 |
Definition | - |
>pfu_aug2.0_37.1_23311.t2 MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI LRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERF RCPESLFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPER KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |