Gene
Gene Model ID | pfu_aug2.0_37.1_23315 |
---|---|
Locus | scaffold37.1 : 615472 ... 625884 : - |
To GenomeBrowser | scaffold37.1:615472..625884 |
Genes list of scaffold | scaffold37.1 |
Synonym | pfu_aug1.0_14409.1_25302 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_37.1_23315.t1 | 1 | 1 | F-box | 83 | 132 | 1.4e-07 | 31.0 | 2.3e-10 | 4.9e-07 | 29.2 |
pfu_aug2.0_37.1_23315.t1 | 1 | 1 | F-box-like | 86 | 135 | 1.3e-09 | 37.6 | 1.3e-12 | 2.8e-09 | 36.5 |
pfu_aug2.0_37.1_23315.t1 | 10 | 1 | LRR_8 | 150 | 193 | 7.9e-07 | 28.7 | 0.0018 | 3.8 | 7.3 |
pfu_aug2.0_37.1_23315.t1 | 14 | 1 | LRR_6 | 156 | 177 | 1.3e-08 | 34.0 | 1.3 | 2900.0 | -1.1 |
pfu_aug2.0_37.1_23315.t1 | 10 | 2 | LRR_8 | 176 | 216 | 7.9e-07 | 28.7 | 0.0005 | 1.1 | 9.1 |
pfu_aug2.0_37.1_23315.t1 | 9 | 1 | LRR_4 | 177 | 193 | 8.9e-12 | 44.3 | 0.01 | 21.0 | 4.8 |
pfu_aug2.0_37.1_23315.t1 | 14 | 2 | LRR_6 | 181 | 203 | 1.3e-08 | 34.0 | 1.0e-05 | 0.021 | 14.8 |
pfu_aug2.0_37.1_23315.t1 | 9 | 2 | LRR_4 | 182 | 218 | 8.9e-12 | 44.3 | 0.0036 | 7.7 | 6.2 |
pfu_aug2.0_37.1_23315.t1 | 10 | 3 | LRR_8 | 182 | 245 | 7.9e-07 | 28.7 | 0.00016 | 0.34 | 10.6 |
pfu_aug2.0_37.1_23315.t1 | 14 | 3 | LRR_6 | 207 | 217 | 1.3e-08 | 34.0 | 0.26 | 540.0 | 1.2 |
pfu_aug2.0_37.1_23315.t1 | 10 | 4 | LRR_8 | 226 | 268 | 7.9e-07 | 28.7 | 1.6e-05 | 0.034 | 13.9 |
pfu_aug2.0_37.1_23315.t1 | 9 | 3 | LRR_4 | 235 | 273 | 8.9e-12 | 44.3 | 8.7e-08 | 0.00018 | 21.0 |
pfu_aug2.0_37.1_23315.t1 | 14 | 4 | LRR_6 | 235 | 248 | 1.3e-08 | 34.0 | 0.013 | 27.0 | 5.2 |
pfu_aug2.0_37.1_23315.t1 | 14 | 5 | LRR_6 | 258 | 276 | 1.3e-08 | 34.0 | 0.0018 | 3.8 | 7.8 |
pfu_aug2.0_37.1_23315.t1 | 9 | 4 | LRR_4 | 285 | 301 | 8.9e-12 | 44.3 | 0.015 | 31.0 | 4.3 |
pfu_aug2.0_37.1_23315.t1 | 10 | 5 | LRR_8 | 285 | 298 | 7.9e-07 | 28.7 | 0.042 | 90.0 | 2.9 |
pfu_aug2.0_37.1_23315.t1 | 14 | 6 | LRR_6 | 287 | 300 | 1.3e-08 | 34.0 | 0.24 | 500.0 | 1.3 |
pfu_aug2.0_37.1_23315.t1 | 14 | 7 | LRR_6 | 317 | 326 | 1.3e-08 | 34.0 | 2.6 | 5400.0 | -1.9 |
pfu_aug2.0_37.1_23315.t1 | 9 | 5 | LRR_4 | 318 | 324 | 8.9e-12 | 44.3 | 0.022 | 47.0 | 3.7 |
pfu_aug2.0_37.1_23315.t1 | 14 | 8 | LRR_6 | 349 | 359 | 1.3e-08 | 34.0 | 7.0 | 15000.0 | -3.6 |
pfu_aug2.0_37.1_23315.t1 | 10 | 6 | LRR_8 | 349 | 383 | 7.9e-07 | 28.7 | 0.065 | 140.0 | 2.3 |
pfu_aug2.0_37.1_23315.t1 | 14 | 9 | LRR_6 | 376 | 385 | 1.3e-08 | 34.0 | 3.0 | 6400.0 | -2.1 |
pfu_aug2.0_37.1_23315.t1 | 14 | 10 | LRR_6 | 408 | 417 | 1.3e-08 | 34.0 | 2.6 | 5400.0 | -1.9 |
pfu_aug2.0_37.1_23315.t1 | 9 | 6 | LRR_4 | 409 | 411 | 8.9e-12 | 44.3 | 0.029 | 62.0 | 3.3 |
pfu_aug2.0_37.1_23315.t1 | 14 | 11 | LRR_6 | 440 | 450 | 1.3e-08 | 34.0 | 7.0 | 15000.0 | -3.6 |
pfu_aug2.0_37.1_23315.t1 | 10 | 7 | LRR_8 | 440 | 473 | 7.9e-07 | 28.7 | 0.11 | 220.0 | 1.6 |
pfu_aug2.0_37.1_23315.t1 | 9 | 7 | LRR_4 | 467 | 506 | 8.9e-12 | 44.3 | 9.3e-06 | 0.02 | 14.5 |
pfu_aug2.0_37.1_23315.t1 | 14 | 12 | LRR_6 | 467 | 476 | 1.3e-08 | 34.0 | 3.0 | 6400.0 | -2.1 |
pfu_aug2.0_37.1_23315.t1 | 10 | 8 | LRR_8 | 467 | 503 | 7.9e-07 | 28.7 | 0.0011 | 2.3 | 8.0 |
pfu_aug2.0_37.1_23315.t1 | 10 | 9 | LRR_8 | 467 | 504 | 7.9e-07 | 28.7 | 0.00065 | 1.4 | 8.7 |
pfu_aug2.0_37.1_23315.t1 | 9 | 8 | LRR_4 | 493 | 532 | 8.9e-12 | 44.3 | 0.00027 | 0.57 | 9.8 |
pfu_aug2.0_37.1_23315.t1 | 14 | 13 | LRR_6 | 493 | 509 | 1.3e-08 | 34.0 | 0.00095 | 2.0 | 8.7 |
pfu_aug2.0_37.1_23315.t1 | 9 | 9 | LRR_4 | 543 | 559 | 8.9e-12 | 44.3 | 0.024 | 51.0 | 3.6 |
pfu_aug2.0_37.1_23315.t1 | 10 | 10 | LRR_8 | 547 | 559 | 7.9e-07 | 28.7 | 0.079 | 170.0 | 2.0 |
pfu_aug2.0_37.1_23315.t1 | 14 | 14 | LRR_6 | 548 | 559 | 1.3e-08 | 34.0 | 0.037 | 79.0 | 3.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_37.1_23315.t1 | gi|731230211|ref|XP_010628974.1| | PREDICTED: F-box/LRR-repeat protein 6 [Fukomys damarensis] | 1.96182e-44 |
pfu_aug2.0_37.1_23315.t1 | gi|586445502|ref|XP_006830946.1| | PREDICTED: F-box/LRR-repeat protein 6 [Chrysochloris asiatica] | 2.00386e-43 |
Transcript
Transcript ID | pfu_aug2.0_37.1_23315.t1 |
---|---|
Definition | - |
>pfu_aug2.0_37.1_23315.t1 atgaagaggcagagggtagaaagaggaatttttggaataaaaaaagacccaaaaaaccagatacttttctcctttcaagc cagagatggtgaagagtggccctcggattctgatgactcggattattgtccatattctgacgatgatgacgccagtcaca agaaaaagaaaaccaagaaaatgatcaagaaaaagagaaaagatgatgataaagctgaagcatccacatctagaatgacc actagtatgaaatgctcaagactcccaactgaaatctggtccaaaatactcatgaatgtagttaacactcagggaccact acccttcctttgcagggctgctaaggtctgtagtatgtggagggacatagtatcccagcctcagttctggaggacagtgg atctctcctatggttggatcaaatctaaggactccacattaaggtggcttgtcagtaacaggttgagtcagtgtgaaaac atcagcttacagaactggggcaatctaagtgatgatgtgctacagactttggccgatggatgtccgagactgaccagtat caacctctcacattgtaagaagctcggacaacagggtctgacagctattatagacagatgtcaaaacctcagggacatca acctggccttcgctagtatcaagatgcctataatcaagcacttgatctctagacacggcataaatctccggcaactaaat atctcaggaaacagttttactggagctgtacttgatctcattgtagcaaactgtccaaacatagagcagcttgacatctc caattccactttctcttcggagtttgctcccattgatgtttatgcattccagaaaggatgtccaaaagttagagtcctca atctgggcaactctaaattcaaagaaaaggttgtcaggggaggcaatataacagattatcctggttttcctcaactagag gagcttagctttggttgtctgaaagtagaaaacagcgcacagatatcttgtagtctactggaaaaacttacatgtgaatc aacaaagttacgcttggtggacttgcgaggctgtaagaatattgttatagattctaacttcttatttctacgctgcttcg atgtagaggagctatatttatccaacagctctgtagagaaatacgggcagtatattgctcactgtctaagtcagggcaat ataacagattatcctggttttcctcaactagaggagcttagctttggttgtctgaaagtagaaaacagcgcacagatatc ttgtagcctactggaaaaacttacatgtgaatcaacaaagctacgcttggtggacttgcgaggctgtaagaatattgtta tagattctaacttcttatttctacgctgcttcgatgtagaggagctatatttatccaacagctctgtagagaaatacggg cagtatattgctcactgtctaagtcagtggtggcacagtttgagagtgctagatctatccaaaaacaaattccgagatga ccaacttaattcctctttgctagctgtgctaagtgatgatccagaactgattgccttggagcaaataaatttagaggcaa cagatgtgtcagaaagaagcataagattgttgattttacgatgtccaaagctgaataagctgaatctgtcctcttgctat ggtctacctcgaggtgtgaaaaaggaacactcaggaaaaaacgtcaagaagctactcaatttactcaactcttga |
Protein
Protein ID | pfu_aug2.0_37.1_23315.t1 |
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Definition | - |
>pfu_aug2.0_37.1_23315.t1 MKRQRVERGIFGIKKDPKNQILFSFQARDGEEWPSDSDDSDYCPYSDDDDASHKKKKTKKMIKKKRKDDDKAEASTSRMT TSMKCSRLPTEIWSKILMNVVNTQGPLPFLCRAAKVCSMWRDIVSQPQFWRTVDLSYGWIKSKDSTLRWLVSNRLSQCEN ISLQNWGNLSDDVLQTLADGCPRLTSINLSHCKKLGQQGLTAIIDRCQNLRDINLAFASIKMPIIKHLISRHGINLRQLN ISGNSFTGAVLDLIVANCPNIEQLDISNSTFSSEFAPIDVYAFQKGCPKVRVLNLGNSKFKEKVVRGGNITDYPGFPQLE ELSFGCLKVENSAQISCSLLEKLTCESTKLRLVDLRGCKNIVIDSNFLFLRCFDVEELYLSNSSVEKYGQYIAHCLSQGN ITDYPGFPQLEELSFGCLKVENSAQISCSLLEKLTCESTKLRLVDLRGCKNIVIDSNFLFLRCFDVEELYLSNSSVEKYG QYIAHCLSQWWHSLRVLDLSKNKFRDDQLNSSLLAVLSDDPELIALEQINLEATDVSERSIRLLILRCPKLNKLNLSSCY GLPRGVKKEHSGKNVKKLLNLLNS |