Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_37.1_23315
Locus scaffold37.1 : 615472 ... 625884 : -
To GenomeBrowser scaffold37.1:615472..625884
Genes list of scaffold scaffold37.1
Synonym pfu_aug1.0_14409.1_25302

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_37.1_23315.t1 1 1 F-box 83 132 1.4e-07 31.0 2.3e-10 4.9e-07 29.2
pfu_aug2.0_37.1_23315.t1 1 1 F-box-like 86 135 1.3e-09 37.6 1.3e-12 2.8e-09 36.5
pfu_aug2.0_37.1_23315.t1 10 1 LRR_8 150 193 7.9e-07 28.7 0.0018 3.8 7.3
pfu_aug2.0_37.1_23315.t1 14 1 LRR_6 156 177 1.3e-08 34.0 1.3 2900.0 -1.1
pfu_aug2.0_37.1_23315.t1 10 2 LRR_8 176 216 7.9e-07 28.7 0.0005 1.1 9.1
pfu_aug2.0_37.1_23315.t1 9 1 LRR_4 177 193 8.9e-12 44.3 0.01 21.0 4.8
pfu_aug2.0_37.1_23315.t1 14 2 LRR_6 181 203 1.3e-08 34.0 1.0e-05 0.021 14.8
pfu_aug2.0_37.1_23315.t1 9 2 LRR_4 182 218 8.9e-12 44.3 0.0036 7.7 6.2
pfu_aug2.0_37.1_23315.t1 10 3 LRR_8 182 245 7.9e-07 28.7 0.00016 0.34 10.6
pfu_aug2.0_37.1_23315.t1 14 3 LRR_6 207 217 1.3e-08 34.0 0.26 540.0 1.2
pfu_aug2.0_37.1_23315.t1 10 4 LRR_8 226 268 7.9e-07 28.7 1.6e-05 0.034 13.9
pfu_aug2.0_37.1_23315.t1 9 3 LRR_4 235 273 8.9e-12 44.3 8.7e-08 0.00018 21.0
pfu_aug2.0_37.1_23315.t1 14 4 LRR_6 235 248 1.3e-08 34.0 0.013 27.0 5.2
pfu_aug2.0_37.1_23315.t1 14 5 LRR_6 258 276 1.3e-08 34.0 0.0018 3.8 7.8
pfu_aug2.0_37.1_23315.t1 9 4 LRR_4 285 301 8.9e-12 44.3 0.015 31.0 4.3
pfu_aug2.0_37.1_23315.t1 10 5 LRR_8 285 298 7.9e-07 28.7 0.042 90.0 2.9
pfu_aug2.0_37.1_23315.t1 14 6 LRR_6 287 300 1.3e-08 34.0 0.24 500.0 1.3
pfu_aug2.0_37.1_23315.t1 14 7 LRR_6 317 326 1.3e-08 34.0 2.6 5400.0 -1.9
pfu_aug2.0_37.1_23315.t1 9 5 LRR_4 318 324 8.9e-12 44.3 0.022 47.0 3.7
pfu_aug2.0_37.1_23315.t1 14 8 LRR_6 349 359 1.3e-08 34.0 7.0 15000.0 -3.6
pfu_aug2.0_37.1_23315.t1 10 6 LRR_8 349 383 7.9e-07 28.7 0.065 140.0 2.3
pfu_aug2.0_37.1_23315.t1 14 9 LRR_6 376 385 1.3e-08 34.0 3.0 6400.0 -2.1
pfu_aug2.0_37.1_23315.t1 14 10 LRR_6 408 417 1.3e-08 34.0 2.6 5400.0 -1.9
pfu_aug2.0_37.1_23315.t1 9 6 LRR_4 409 411 8.9e-12 44.3 0.029 62.0 3.3
pfu_aug2.0_37.1_23315.t1 14 11 LRR_6 440 450 1.3e-08 34.0 7.0 15000.0 -3.6
pfu_aug2.0_37.1_23315.t1 10 7 LRR_8 440 473 7.9e-07 28.7 0.11 220.0 1.6
pfu_aug2.0_37.1_23315.t1 9 7 LRR_4 467 506 8.9e-12 44.3 9.3e-06 0.02 14.5
pfu_aug2.0_37.1_23315.t1 14 12 LRR_6 467 476 1.3e-08 34.0 3.0 6400.0 -2.1
pfu_aug2.0_37.1_23315.t1 10 8 LRR_8 467 503 7.9e-07 28.7 0.0011 2.3 8.0
pfu_aug2.0_37.1_23315.t1 10 9 LRR_8 467 504 7.9e-07 28.7 0.00065 1.4 8.7
pfu_aug2.0_37.1_23315.t1 9 8 LRR_4 493 532 8.9e-12 44.3 0.00027 0.57 9.8
pfu_aug2.0_37.1_23315.t1 14 13 LRR_6 493 509 1.3e-08 34.0 0.00095 2.0 8.7
pfu_aug2.0_37.1_23315.t1 9 9 LRR_4 543 559 8.9e-12 44.3 0.024 51.0 3.6
pfu_aug2.0_37.1_23315.t1 10 10 LRR_8 547 559 7.9e-07 28.7 0.079 170.0 2.0
pfu_aug2.0_37.1_23315.t1 14 14 LRR_6 548 559 1.3e-08 34.0 0.037 79.0 3.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_37.1_23315.t1 gi|731230211|ref|XP_010628974.1| PREDICTED: F-box/LRR-repeat protein 6 [Fukomys damarensis] 1.96182e-44
pfu_aug2.0_37.1_23315.t1 gi|586445502|ref|XP_006830946.1| PREDICTED: F-box/LRR-repeat protein 6 [Chrysochloris asiatica] 2.00386e-43

Transcript
Transcript IDpfu_aug2.0_37.1_23315.t1
Definition-
>pfu_aug2.0_37.1_23315.t1
atgaagaggcagagggtagaaagaggaatttttggaataaaaaaagacccaaaaaaccagatacttttctcctttcaagc
cagagatggtgaagagtggccctcggattctgatgactcggattattgtccatattctgacgatgatgacgccagtcaca
agaaaaagaaaaccaagaaaatgatcaagaaaaagagaaaagatgatgataaagctgaagcatccacatctagaatgacc
actagtatgaaatgctcaagactcccaactgaaatctggtccaaaatactcatgaatgtagttaacactcagggaccact
acccttcctttgcagggctgctaaggtctgtagtatgtggagggacatagtatcccagcctcagttctggaggacagtgg
atctctcctatggttggatcaaatctaaggactccacattaaggtggcttgtcagtaacaggttgagtcagtgtgaaaac
atcagcttacagaactggggcaatctaagtgatgatgtgctacagactttggccgatggatgtccgagactgaccagtat
caacctctcacattgtaagaagctcggacaacagggtctgacagctattatagacagatgtcaaaacctcagggacatca
acctggccttcgctagtatcaagatgcctataatcaagcacttgatctctagacacggcataaatctccggcaactaaat
atctcaggaaacagttttactggagctgtacttgatctcattgtagcaaactgtccaaacatagagcagcttgacatctc
caattccactttctcttcggagtttgctcccattgatgtttatgcattccagaaaggatgtccaaaagttagagtcctca
atctgggcaactctaaattcaaagaaaaggttgtcaggggaggcaatataacagattatcctggttttcctcaactagag
gagcttagctttggttgtctgaaagtagaaaacagcgcacagatatcttgtagtctactggaaaaacttacatgtgaatc
aacaaagttacgcttggtggacttgcgaggctgtaagaatattgttatagattctaacttcttatttctacgctgcttcg
atgtagaggagctatatttatccaacagctctgtagagaaatacgggcagtatattgctcactgtctaagtcagggcaat
ataacagattatcctggttttcctcaactagaggagcttagctttggttgtctgaaagtagaaaacagcgcacagatatc
ttgtagcctactggaaaaacttacatgtgaatcaacaaagctacgcttggtggacttgcgaggctgtaagaatattgtta
tagattctaacttcttatttctacgctgcttcgatgtagaggagctatatttatccaacagctctgtagagaaatacggg
cagtatattgctcactgtctaagtcagtggtggcacagtttgagagtgctagatctatccaaaaacaaattccgagatga
ccaacttaattcctctttgctagctgtgctaagtgatgatccagaactgattgccttggagcaaataaatttagaggcaa
cagatgtgtcagaaagaagcataagattgttgattttacgatgtccaaagctgaataagctgaatctgtcctcttgctat
ggtctacctcgaggtgtgaaaaaggaacactcaggaaaaaacgtcaagaagctactcaatttactcaactcttga

Protein
Protein IDpfu_aug2.0_37.1_23315.t1
Definition-
>pfu_aug2.0_37.1_23315.t1
MKRQRVERGIFGIKKDPKNQILFSFQARDGEEWPSDSDDSDYCPYSDDDDASHKKKKTKKMIKKKRKDDDKAEASTSRMT
TSMKCSRLPTEIWSKILMNVVNTQGPLPFLCRAAKVCSMWRDIVSQPQFWRTVDLSYGWIKSKDSTLRWLVSNRLSQCEN
ISLQNWGNLSDDVLQTLADGCPRLTSINLSHCKKLGQQGLTAIIDRCQNLRDINLAFASIKMPIIKHLISRHGINLRQLN
ISGNSFTGAVLDLIVANCPNIEQLDISNSTFSSEFAPIDVYAFQKGCPKVRVLNLGNSKFKEKVVRGGNITDYPGFPQLE
ELSFGCLKVENSAQISCSLLEKLTCESTKLRLVDLRGCKNIVIDSNFLFLRCFDVEELYLSNSSVEKYGQYIAHCLSQGN
ITDYPGFPQLEELSFGCLKVENSAQISCSLLEKLTCESTKLRLVDLRGCKNIVIDSNFLFLRCFDVEELYLSNSSVEKYG
QYIAHCLSQWWHSLRVLDLSKNKFRDDQLNSSLLAVLSDDPELIALEQINLEATDVSERSIRLLILRCPKLNKLNLSSCY
GLPRGVKKEHSGKNVKKLLNLLNS

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495