Gene
| Gene Model ID | pfu_aug2.0_3701.1_05878 |
|---|---|
| Locus | scaffold3701.1 : 9123 ... 56146 : - |
| To GenomeBrowser | scaffold3701.1:9123..56146 |
| Genes list of scaffold | scaffold3701.1 |
| Synonym | pfu_aug1.0_4078.1_52173 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3701.1_05878.t1 | 5 | 1 | MIB_HERC2 | 23 | 87 | 5.3e-26 | 90.3 | 2.2e-28 | 3.6e-25 | 87.7 |
| pfu_aug2.0_3701.1_05878.t1 | 5 | 2 | MIB_HERC2 | 116 | 130 | 5.3e-26 | 90.3 | 1.1 | 1800.0 | -1.1 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 1 | Ank_4 | 254 | 271 | 3.9e-24 | 84.5 | 2.4 | 3900.0 | -1.5 |
| pfu_aug2.0_3701.1_05878.t1 | 4 | 1 | Ank_2 | 305 | 372 | 3.3e-31 | 107.4 | 1.0e-13 | 1.7e-10 | 41.0 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 2 | Ank_4 | 305 | 350 | 3.9e-24 | 84.5 | 3.8e-05 | 0.062 | 13.8 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 1 | Ank | 306 | 322 | 2.2e-30 | 102.9 | 0.32 | 520.0 | 0.7 |
| pfu_aug2.0_3701.1_05878.t1 | 4 | 1 | Ank_5 | 329 | 369 | 5.2e-28 | 96.4 | 5.2e-12 | 8.6e-09 | 35.3 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 2 | Ank | 330 | 360 | 2.2e-30 | 102.9 | 1.3e-09 | 2.2e-06 | 27.1 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 1 | Ank_3 | 330 | 356 | 7.5e-19 | 65.9 | 5.5e-06 | 0.0091 | 16.1 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 3 | Ank_4 | 332 | 372 | 3.9e-24 | 84.5 | 2.9e-09 | 4.8e-06 | 26.9 |
| pfu_aug2.0_3701.1_05878.t1 | 5 | 3 | MIB_HERC2 | 353 | 408 | 5.3e-26 | 90.3 | 2.5 | 4000.0 | -2.2 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 3 | Ank | 362 | 372 | 2.2e-30 | 102.9 | 0.021 | 34.0 | 4.4 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 2 | Ank_3 | 362 | 371 | 7.5e-19 | 65.9 | 0.69 | 1100.0 | 0.3 |
| pfu_aug2.0_3701.1_05878.t1 | 4 | 2 | Ank_2 | 377 | 417 | 3.3e-31 | 107.4 | 2.0e-05 | 0.034 | 14.4 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 4 | Ank_4 | 391 | 413 | 3.9e-24 | 84.5 | 0.00025 | 0.41 | 11.2 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 4 | Ank | 392 | 419 | 2.2e-30 | 102.9 | 8.6e-08 | 0.00014 | 21.4 |
| pfu_aug2.0_3701.1_05878.t1 | 4 | 2 | Ank_5 | 392 | 431 | 5.2e-28 | 96.4 | 3.5e-07 | 0.00057 | 20.0 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 3 | Ank_3 | 392 | 416 | 7.5e-19 | 65.9 | 7.3e-05 | 0.12 | 12.6 |
| pfu_aug2.0_3701.1_05878.t1 | 4 | 3 | Ank_2 | 397 | 472 | 3.3e-31 | 107.4 | 2.0e-18 | 3.3e-15 | 56.2 |
| pfu_aug2.0_3701.1_05878.t1 | 4 | 3 | Ank_5 | 412 | 467 | 5.2e-28 | 96.4 | 1.2e-12 | 2.0e-09 | 37.4 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 5 | Ank | 428 | 457 | 2.2e-30 | 102.9 | 2.9e-10 | 4.8e-07 | 29.2 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 4 | Ank_3 | 428 | 454 | 7.5e-19 | 65.9 | 2.3e-08 | 3.7e-05 | 23.5 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 5 | Ank_4 | 429 | 473 | 3.9e-24 | 84.5 | 5.4e-11 | 8.8e-08 | 32.4 |
| pfu_aug2.0_3701.1_05878.t1 | 5 | 4 | MIB_HERC2 | 447 | 462 | 5.3e-26 | 90.3 | 6.8 | 11000.0 | -3.6 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 6 | Ank | 459 | 518 | 2.2e-30 | 102.9 | 1.1e-06 | 0.0018 | 17.9 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 5 | Ank_3 | 459 | 470 | 7.5e-19 | 65.9 | 0.077 | 130.0 | 3.3 |
| pfu_aug2.0_3701.1_05878.t1 | 4 | 4 | Ank_2 | 460 | 527 | 3.3e-31 | 107.4 | 1.6e-05 | 0.026 | 14.8 |
| pfu_aug2.0_3701.1_05878.t1 | 4 | 4 | Ank_5 | 503 | 527 | 5.2e-28 | 96.4 | 0.0011 | 1.9 | 8.8 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 6 | Ank_4 | 504 | 527 | 3.9e-24 | 84.5 | 0.0038 | 6.2 | 7.4 |
| pfu_aug2.0_3701.1_05878.t1 | 3 | 1 | PAX | 528 | 544 | 5.2e-30 | 103.7 | 2.7 | 4400.0 | -2.7 |
| pfu_aug2.0_3701.1_05878.t1 | 1 | 1 | zf-C3HC4_3 | 564 | 606 | 2.3e-08 | 33.5 | 3.0e-11 | 5.0e-08 | 32.4 |
| pfu_aug2.0_3701.1_05878.t1 | 3 | 2 | PAX | 589 | 634 | 5.2e-30 | 103.7 | 2.2 | 3700.0 | -2.5 |
| pfu_aug2.0_3701.1_05878.t1 | 3 | 3 | PAX | 758 | 828 | 5.2e-30 | 103.7 | 5.8e-33 | 9.5e-30 | 102.8 |
| pfu_aug2.0_3701.1_05878.t1 | 5 | 5 | MIB_HERC2 | 968 | 991 | 5.3e-26 | 90.3 | 5.8 | 9600.0 | -3.4 |
| pfu_aug2.0_3701.1_05878.t1 | 6 | 6 | Ank_3 | 1019 | 1037 | 7.5e-19 | 65.9 | 0.45 | 740.0 | 0.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3701.1_05878.t1 | gi|118918381|ref|NP_001073146.1| | E3 ubiquitin-protein ligase MIB2 [Danio rerio] | 0.0 |
| pfu_aug2.0_3701.1_05878.t1 | gi|657576697|ref|XP_008292141.1| | PREDICTED: E3 ubiquitin-protein ligase MIB2 [Stegastes partitus] | 0.0 |
| pfu_aug2.0_3701.1_05878.t1 | gi|734622954|ref|XP_010739452.1| | PREDICTED: E3 ubiquitin-protein ligase MIB2 isoform X1 [Larimichthys crocea] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3701.1_05878.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3701.1_05878.t1 agtaaaagttcccaagagacaggacgtagttaacagcaataagttgccatcgtacggtatatttaccggagctcgtgttg tgaggggaccggactgggactggggtaatcaggatggaggagaaggtaaagttgggcgtgtgacagatatcaggggttgg gatgcggaatctggtcgtagcgtggctcacgtcacttggcagacgtcctctactaacgtgtacagagtggggcataaagg gaaagtagacctcaagtacattatgccggcaaaaggaccagagtactataaggaacatctacctgttttgggtgagttca cagacagtgtgaatgccggcacgatacagaatcagtttagagtcggcgataaagtgagagtagatctagaggcagagata ctaaaagcgatgcaggaaggtcacggaggatggaatccacgtatgtcagagtatataggacgtataggtaccgtacacag gatcacagagagaggtgacgtacgtgtctcgtacgaaggttgtagtaacagatggaccttccatccaggtgctttaacca aggtgcatttgtttgccattaatgacatcgttaaaatatcagagagtatacacctagtcaaagaattacagaaagggcat ggagaatggacagataacatgaaaatgacgttgggtcgtgtaggaagggtactgaaagtttacgctgacggagacttacg cgtggctgtagctaatcagacatggacgtttaacccagcttgctgcgtattagtgccatcacagggccctgacatcaata acacaaatagaggtcacgagagagaggaacacactactacgttaacggagattttagaacagctgatggagatgaaggta cagcctaccggacctgatcgtctggtaagagaggcggctcaaggtcactcagacgtcgtacaagacatcgtcagtaaatt tgctgatcaggttgacatgaagagcgctggcaagacggcattacaagtggctagccaccaaggtcacaaggacattgtcc agatcctactggcagctggggcggatctagaggtgcaagatgaagacggagacacggcattacattactcggcttttggt gcaacagagaaaatcctggctaagtgtcgtcagatagttgatataaagaaagatgatggattttcgtctcttcacctagc ggcacttaacggtcataaagacgtgacaaatgttttacttacacaggggcatgcatctctagagatacgtaacaacagac aacagacgccgctcctactagctgtttcccaaggacatattcctatcatcgaattattagttagtcgtggggcggacatt aatgtagaagatgaggatggtgacacagcattacatcttgctctcatgagacaatctgtcaccacagagagagaacatac ccccatgcttgaagctattcgggaccagctaggtttgttagacgatgatgaccagatgtctgcggccctcgcgtgctatc tagctcaacaaggggccagtctaaaccataaaaatcaccaggggaaaactccgctagatgtcatcaccgaccctaaaata gaagacaaagtcagacagtttgctacaactcaagcacacggtaatgttccgagcttgcgatccagtagcctgaaggtgga gcatgagctgacagagtgtctggtgtgctcagacaacatggccaccgtcaaagtagagccgtgcggacactacgctgcct gtagagaatgtgtcattaaaatgaagaggtgcattatctgcagagaaattattgaaaacaaaatcttaccaggggacaag tcagtagggcgtggtaaaccggaaatgacagcagaagtcctaaatattcacattaaacaggaaatatccgaaaatggcgc caagaaaggatcggaggaagatatcgagaaattggtctcgaagccggacatggtcggcagtcaggaaaatagcatggaca ttacagacgacccggaagtagatgagaggttaggagaaaaagaagtgacgtcagaaggcgagaagttaacgtcaccggcg ggtgtttacatgatggcggaaagtacgatagagggcgctaacgccagcgaacagttacaaaggatgattcaacagcagta cctcgttaacttgatacaatttcagcagtcaatgttacaggcaacatccttctggatcgagggtcctaaatacagaccca ttctcctggggcagccatgcgggcagtgccgtctgagatacagaaagacaggcagcattaatccagggcagattgggggt agtaaacctaaagtgaccacccctgatgtagtcaacagggtccgccactacaaactggaaaatcctcagatgtttgcatg ggaaataagacaaaaattgttagcagacggcatatgtaacgagaagaacatcccgtccatcagctctatcaacagaatta tcagggacaaagccattctacaacgccgctgtgtggaggggattcctgtagtggattcagacgatgcaggggaaggtgat gaaatctccatggatccagaaaatctgaaacactttatgattacagtcccagggatggttgctgggcaacagacaagccc aaacgccaatgaaaatccatgttctatcattccaattcaggcattggctaacgctgctgttgccatagatacgtcacagg gtgtggtcactgtcggcatgacgagttctccatccatggtcacgcctcagacggtagtgtccagtgctcagccaagcctg aacgctgacctgacacagaatgtaccgatactaacaatggcattgccaaccactgtacatccaggtgacaaacataaaaa ccaggatattacagcatcgggaatgaaaaaattggataacgaaagtgtctcggatatcaaagtagtacaactagactatg gttcagagaatgcaggacatatgtctgatgttacaatgaagggctcaaatgctatgaaagaggataaaaatgacgtccca atatcaacaacaatggaagtagctcgacaaggcaatcttcaggccgtcatctcgcacttaatttcaactcattcatcctc aatgcttaaagatgatgaggttgtcccagaaaaacccaaaacatcgcccaaagggaggaaggatggtaacgtaaagggaa attcacagtccaaaatggcagcgaccattccaaacgtaccgacatctattttggggaacttgtctcatagttcgccaaca acacggaactcccccagcagctcacttcccactagccccaaaatgacgaaaggacggaacagagtgtcgagtaaaagtga aagtggatcttcatccggaagtccttcaccttcagggaggtcaaggtcgggaacaaagcatgttgctaacggtaacgttg tttatggacaacagcaagtagcctatgataagtttagtggtatgttttatgattattccttacctgatcgtggtttggga tcggctgctgtaccagctagagtatcgcccccacaacagtcaccgaaaaatgttgccatgccgataacacctggctggtc ttacccacaatcccctatacaacttcctgttccaagtccaactttgtcagaaaagaataggacatcaccacttgatctct ctgcacagccgtctaaggaagtgtctaaacaaccggaagctttaccaaagaacggcaaaaagaatacacaaaatcatcca gcaaaagtgcctccgtctaaaacagtgtcggacaatccagaaaatattacgacagaaacttctttgaaagcttcgagttc agataaggaggtggcttcgcctgttgctcattatgacagaaacattctcatttttggtgaaaaagcggtagaaattattt ccgtcggaaataataaatggatcgtcagaaatgaagatgaactttgtcaaattgcttcgggagagctgataaagaaaaat catacagaaaattgtctaaatagtgctagttgtagctcctctccttctgtttcaccacgcatgcaggtcaaaaggttatc agaaggtcaaggtgactctagtgaatcctcaccattgaaagtcccaagattgaatggtactgactctgtagataatgaca ctgagaattcggattcaggtgctaataaagataagaatcccaattcagacccagtcgctcttggcaacaccttagaagga gatcatacgcccaatagtaaaagcagcagtgaggcaccaggcggggaaactaataaaaactgtcctgtcttacagaacat gttacagaccggctcccagcagtcatga |
|
Protein
| Protein ID | pfu_aug2.0_3701.1_05878.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3701.1_05878.t1 VKVPKRQDVVNSNKLPSYGIFTGARVVRGPDWDWGNQDGGEGKVGRVTDIRGWDAESGRSVAHVTWQTSSTNVYRVGHKG KVDLKYIMPAKGPEYYKEHLPVLGEFTDSVNAGTIQNQFRVGDKVRVDLEAEILKAMQEGHGGWNPRMSEYIGRIGTVHR ITERGDVRVSYEGCSNRWTFHPGALTKVHLFAINDIVKISESIHLVKELQKGHGEWTDNMKMTLGRVGRVLKVYADGDLR VAVANQTWTFNPACCVLVPSQGPDINNTNRGHEREEHTTTLTEILEQLMEMKVQPTGPDRLVREAAQGHSDVVQDIVSKF ADQVDMKSAGKTALQVASHQGHKDIVQILLAAGADLEVQDEDGDTALHYSAFGATEKILAKCRQIVDIKKDDGFSSLHLA ALNGHKDVTNVLLTQGHASLEIRNNRQQTPLLLAVSQGHIPIIELLVSRGADINVEDEDGDTALHLALMRQSVTTEREHT PMLEAIRDQLGLLDDDDQMSAALACYLAQQGASLNHKNHQGKTPLDVITDPKIEDKVRQFATTQAHGNVPSLRSSSLKVE HELTECLVCSDNMATVKVEPCGHYAACRECVIKMKRCIICREIIENKILPGDKSVGRGKPEMTAEVLNIHIKQEISENGA KKGSEEDIEKLVSKPDMVGSQENSMDITDDPEVDERLGEKEVTSEGEKLTSPAGVYMMAESTIEGANASEQLQRMIQQQY LVNLIQFQQSMLQATSFWIEGPKYRPILLGQPCGQCRLRYRKTGSINPGQIGGSKPKVTTPDVVNRVRHYKLENPQMFAW EIRQKLLADGICNEKNIPSISSINRIIRDKAILQRRCVEGIPVVDSDDAGEGDEISMDPENLKHFMITVPGMVAGQQTSP NANENPCSIIPIQALANAAVAIDTSQGVVTVGMTSSPSMVTPQTVVSSAQPSLNADLTQNVPILTMALPTTVHPGDKHKN QDITASGMKKLDNESVSDIKVVQLDYGSENAGHMSDVTMKGSNAMKEDKNDVPISTTMEVARQGNLQAVISHLISTHSSS MLKDDEVVPEKPKTSPKGRKDGNVKGNSQSKMAATIPNVPTSILGNLSHSSPTTRNSPSSSLPTSPKMTKGRNRVSSKSE SGSSSGSPSPSGRSRSGTKHVANGNVVYGQQQVAYDKFSGMFYDYSLPDRGLGSAAVPARVSPPQQSPKNVAMPITPGWS YPQSPIQLPVPSPTLSEKNRTSPLDLSAQPSKEVSKQPEALPKNGKKNTQNHPAKVPPSKTVSDNPENITTETSLKASSS DKEVASPVAHYDRNILIFGEKAVEIISVGNNKWIVRNEDELCQIASGELIKKNHTENCLNSASCSSSPSVSPRMQVKRLS EGQGDSSESSPLKVPRLNGTDSVDNDTENSDSGANKDKNPNSDPVALGNTLEGDHTPNSKSSSEAPGGETNKNCPVLQNM LQTGSQQS |
|