Gene
| Gene Model ID | pfu_aug2.0_371.1_04067 |
|---|---|
| Locus | scaffold371.1 : 75383 ... 81295 : - |
| To GenomeBrowser | scaffold371.1:75383..81295 |
| Genes list of scaffold | scaffold371.1 |
| Synonym | pfu_aug1.0_236551.1_50221 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mesencephalic astrocyte-derived neurotrophic factor | GO:0044424 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_371.1_04067.t1 | 2 | 1 | Armet | 29 | 74 | 1.6e-32 | 112.2 | 2.5e-14 | 7.6e-11 | 41.9 |
| pfu_aug2.0_371.1_04067.t1 | 2 | 2 | Armet | 72 | 133 | 1.6e-32 | 112.2 | 3.2e-25 | 9.6e-22 | 77.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_371.1_04067.t1 | gi|589931265|ref|XP_006978437.1| | PREDICTED: mesencephalic astrocyte-derived neurotrophic factor [Peromyscus maniculatus bairdii] | 9.0e-29 |
| pfu_aug2.0_371.1_04067.t1 | gi|675750155|ref|XP_003818847.2| | PREDICTED: mesencephalic astrocyte-derived neurotrophic factor [Pan paniscus] | 2.0e-28 |
| pfu_aug2.0_371.1_04067.t1 | gi|524949819|ref|XP_005074926.1| | PREDICTED: mesencephalic astrocyte-derived neurotrophic factor [Mesocricetus auratus] | 2.0e-28 |
| pfu_aug2.0_371.1_04067.t1 | gi|618857509|ref|NP_006001.4| | mesencephalic astrocyte-derived neurotrophic factor precursor [Homo sapiens] | 2.0e-28 |
| pfu_aug2.0_371.1_04067.t1 | gi|532082555|ref|XP_005327025.1| | PREDICTED: mesencephalic astrocyte-derived neurotrophic factor [Ictidomys tridecemlineatus] | 2.0e-28 |
Transcript
| Transcript ID | pfu_aug2.0_371.1_04067.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_371.1_04067.t1 atgcgtttacctacaacagaagctgtgttggctgtgtttcttagtttgatcgtcgtgtcaacatgtgctaaaatcaaaga aggagagtgtgaagtatgtgtgaaagtgttggacagattcataacagatgtagtgactgatgatttaaaaaaggatccaa aagcaattgaggaagcattcatggatttctgcaaaaatcttagaggaaaagaagaaagatttatagacctatcaaaggta gacctgaagaaactgaaggtgaaagacttgaagaaaatcttatcggactggaatgaggaccaagcttgcaaaggatgtgc tgagaaatcagactttatacgagtggtcgaagaattaatgccgaaatacgcaccagacgctcataaagcaaggcagcaaa aaacagaattatag |
|
Protein
| Protein ID | pfu_aug2.0_371.1_04067.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_371.1_04067.t1 MRLPTTEAVLAVFLSLIVVSTCAKIKEGECEVCVKVLDRFITDVVTDDLKKDPKAIEEAFMDFCKNLRGKEERFIDLSKV DLKKLKVKDLKKILSDWNEDQACKGCAEKSDFIRVVEELMPKYAPDAHKARQQKTEL |
|