Gene
| Gene Model ID | pfu_aug2.0_3728.1_29174 |
|---|---|
| Locus | scaffold3728.1 : 38616 ... 45500 : + |
| To GenomeBrowser | scaffold3728.1:38616..45500 |
| Genes list of scaffold | scaffold3728.1 |
| Synonym | pfu_aug1.0_9992.1_60716 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3728.1_29174.t1 | 2 | 1 | Rab3-GTPase_cat | 20 | 48 | 0.0 | 210.3 | 0.23 | 3300.0 | -2.8 |
| pfu_aug2.0_3728.1_29174.t1 | 2 | 2 | Rab3-GTPase_cat | 141 | 307 | 0.0 | 210.3 | 0.0 | 0.0 | 209.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3728.1_29174.t1 | gi|557022650|ref|XP_006011569.1| | PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X3 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_3728.1_29174.t1 | gi|557022646|ref|XP_006011567.1| | PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_3728.1_29174.t1 | gi|557022648|ref|XP_006011568.1| | PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_3728.1_29174.t1 | gi|704520325|ref|XP_010083014.1| | PREDICTED: rab3 GTPase-activating protein catalytic subunit-like, partial [Pterocles gutturalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3728.1_29174.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3728.1_29174.t1 atgttgaattgctgtatagagagaaaaataaaacgggaacagatttacaaaggctacacaggagaatccttggaaacacc tgacagtgattctggttgcctagcaactgataaacagttagccaatcacaataaaatgtccaaaagtgatagcttgacta cttctttctcaaaggaaaatttaacgtgcaatagtgataattcagaacagcaaaaccgggatgcaaaacataactgtgat tctctgacagaggaacttccagctaaaattgttcacctggatagttcaagtgaagatgaagaattttttgagtgtgatga ggagagtatggatgaagattctagtcgatcaaataccaaacagctcacacatatagacagtgttgatacgacgtcaagtt ccgaagctccgttccacgatagcattacgcataaacccgaggggcggcagtgtcgtcatggcgatctcctcctcctacat gtggacgagccgttatatatacccctgactcaggaaccgtcacctatgacagaagacatgctggaggaacacgcagaggt tctagcaaagctgggtacttcatcagagggagcccagctcagagccaggatgcagagtgcttgtctggtatcagatatgg aatcatttaaggctgccaacccaggttgtgttctagaggattttgttagatggtattcacccagagactggattgtagat gacgatgatgttatagatgataatgtcgatgacaataaggatgatcctaagcaaataaaaggtcatctgagctcacgtat gcagattcctggtaacgtgtgggtggaggcgtggaatggagcacggcccgtaccggcacgaaggcaaaaacggctctttg acgatacaaaagaggctgagaaggtccttcatttcctagcttccatgaaaccaggtgacgtcatcagaaatttactgtct gtattggttcactcggctattataaccatagtagagaatgaacactcggacatacccaaacttacagaaatggtacagca actggttaccatggcgagtaaagtcacacggacacctcatcaagatataaaaagatacgaggatttaattcgacggatag catttgtggaaaccctaatcgcacgagctcggtcactgaaggataaatttaccactgatctcatagaccgtccggactgt cttgacgagatgcagaagtttgtatgtgacatgctacattacccagaagtctctgtgaggggtgggcccagtggaccggc cgggtccgttatacataaactgtttgtagcggcacagaaggagctttacatgatatcagattccgactcgtcatccaaca cggagcatcagagcactgtaccagactttccgcgaccctccgccagggaatatattctacgtaccacagccccccggcca gctccttattctaaaactctaccccataaaatgtactgtagcctgatggaggggcacgagttccgattggctggagcttt ctcttccgattctgtctttcagtga |
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Protein
| Protein ID | pfu_aug2.0_3728.1_29174.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3728.1_29174.t1 MLNCCIERKIKREQIYKGYTGESLETPDSDSGCLATDKQLANHNKMSKSDSLTTSFSKENLTCNSDNSEQQNRDAKHNCD SLTEELPAKIVHLDSSSEDEEFFECDEESMDEDSSRSNTKQLTHIDSVDTTSSSEAPFHDSITHKPEGRQCRHGDLLLLH VDEPLYIPLTQEPSPMTEDMLEEHAEVLAKLGTSSEGAQLRARMQSACLVSDMESFKAANPGCVLEDFVRWYSPRDWIVD DDDVIDDNVDDNKDDPKQIKGHLSSRMQIPGNVWVEAWNGARPVPARRQKRLFDDTKEAEKVLHFLASMKPGDVIRNLLS VLVHSAIITIVENEHSDIPKLTEMVQQLVTMASKVTRTPHQDIKRYEDLIRRIAFVETLIARARSLKDKFTTDLIDRPDC LDEMQKFVCDMLHYPEVSVRGGPSGPAGSVIHKLFVAAQKELYMISDSDSSSNTEHQSTVPDFPRPSAREYILRTTAPRP APYSKTLPHKMYCSLMEGHEFRLAGAFSSDSVFQ |
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