Gene
| Gene Model ID | pfu_aug2.0_3738.1_29175 |
|---|---|
| Locus | scaffold3738.1 : 31879 ... 38295 : - |
| To GenomeBrowser | scaffold3738.1:31879..38295 |
| Genes list of scaffold | scaffold3738.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3738.1_29175.t1 | 2 | 1 | Ig_3 | 8 | 81 | 8.5e-10 | 39.0 | 4.6e-13 | 8.5e-10 | 39.0 |
| pfu_aug2.0_3738.1_29175.t1 | 1 | 1 | Ig_2 | 9 | 94 | 3.6e-12 | 46.2 | 4.2e-15 | 7.7e-12 | 45.1 |
| pfu_aug2.0_3738.1_29175.t1 | 1 | 1 | V-set | 12 | 81 | 5.5e-07 | 29.4 | 3.7e-09 | 6.9e-06 | 25.9 |
| pfu_aug2.0_3738.1_29175.t1 | 1 | 1 | I-set | 13 | 94 | 5.0e-17 | 61.5 | 4.4e-20 | 8.1e-17 | 60.8 |
| pfu_aug2.0_3738.1_29175.t1 | 1 | 1 | ig | 21 | 78 | 2.9e-11 | 43.3 | 3.9e-14 | 7.3e-11 | 42.0 |
| pfu_aug2.0_3738.1_29175.t1 | 1 | 1 | TSP_1 | 102 | 151 | 1.4e-11 | 44.2 | 1.8e-14 | 3.3e-11 | 43.0 |
| pfu_aug2.0_3738.1_29175.t1 | 2 | 2 | Ig_3 | 110 | 114 | 8.5e-10 | 39.0 | 1.9 | 3400.0 | -1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3738.1_29175.t1 | gi|478501336|ref|XP_004424980.1| | PREDICTED: hemicentin-1 [Ceratotherium simum simum] | 2.0e-23 |
| pfu_aug2.0_3738.1_29175.t1 | gi|511896859|ref|XP_004768022.1| | PREDICTED: hemicentin-1 isoform X2 [Mustela putorius furo] | 3.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_3738.1_29175.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3738.1_29175.t1 atgccagaacgtgaagaagatccagcaatatctgcaccattaccagtaacagggaacgaaggagaccaagtcaaacttgc atgcaacacctctggataccctgcacccacggtggtatggactaaagaaagtaccactttacctggtggagacttggata tttcagttgattcaaacaattcactgataatagacaacgccaatcaatcggataatggcgtatacacatgtggcgcaact aatattatgtccactgtatcagatgatataacactaaatatttcacctatcaatggcggttggtctcaatggagtttttg gtcttcctgttcagtttcatgtggtacagggaccaaaacacgatttcgggcgtgtgattcaccaataccatcatacagtg ggtcaaactgttatggaaacgtatcggaaagcaactcatgtatagaaatgtgtaatgatactgatgacgataaaggatgt acatgtaactgtgttgatattgtggtgaatgtcaccctcgaggaaagattaacacagctaagaaatattcttaaagttaa taaatctaccttatcgtcgacaagaagaaaactaattagtgttggtgattcacgtcccagtgcggagcgaataggttact tcggaattgtcctgctttgtatcatcggcgccatgttgattttctcagatgtaaaattagtgttgtctgcttttatttct aaatttaataaatgtaagcaagcttag |
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Protein
| Protein ID | pfu_aug2.0_3738.1_29175.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3738.1_29175.t1 MPEREEDPAISAPLPVTGNEGDQVKLACNTSGYPAPTVVWTKESTTLPGGDLDISVDSNNSLIIDNANQSDNGVYTCGAT NIMSTVSDDITLNISPINGGWSQWSFWSSCSVSCGTGTKTRFRACDSPIPSYSGSNCYGNVSESNSCIEMCNDTDDDKGC TCNCVDIVVNVTLEERLTQLRNILKVNKSTLSSTRRKLISVGDSRPSAERIGYFGIVLLCIIGAMLIFSDVKLVLSAFIS KFNKCKQA |
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