Gene
| Gene Model ID | pfu_aug2.0_374.1_14065 |
|---|---|
| Locus | scaffold374.1 : 118587 ... 131085 : - |
| To GenomeBrowser | scaffold374.1:118587..131085 |
| Genes list of scaffold | scaffold374.1 |
| Synonym | pfu_aug1.0_5244.1_30913 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_374.1_14065.t1 | 3 | 1 | F-box-like | 10 | 48 | 2.0e-06 | 27.4 | 5.3e-10 | 2.0e-06 | 27.4 |
| pfu_aug2.0_374.1_14065.t1 | 3 | 2 | F-box-like | 115 | 122 | 2.0e-06 | 27.4 | 3.5 | 13000.0 | -4.1 |
| pfu_aug2.0_374.1_14065.t1 | 3 | 3 | F-box-like | 646 | 667 | 2.0e-06 | 27.4 | 1.3 | 4900.0 | -2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_374.1_14065.t1 | gi|524874494|ref|XP_005093982.1| | PREDICTED: F-box/LRR-repeat protein 18-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_374.1_14065.t1 | gi|301603729|ref|XP_002931545.1| | PREDICTED: F-box/LRR-repeat protein 18 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_374.1_14065.t1 | gi|533168570|ref|XP_005397897.1| | PREDICTED: F-box/LRR-repeat protein 18 isoform X1 [Chinchilla lanigera] | 0.0 |
| pfu_aug2.0_374.1_14065.t1 | gi|507638729|ref|XP_004629745.1| | PREDICTED: F-box/LRR-repeat protein 18 [Octodon degus] | 0.0 |
| pfu_aug2.0_374.1_14065.t1 | gi|556965735|ref|XP_005992383.1| | PREDICTED: F-box/LRR-repeat protein 18 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_374.1_14065.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_374.1_14065.t1 atggcagtcacgaatttccacaattttccagacaatttgatattagagatcttttcatatgtatctcctacagatttgtg taatctttaccatgttaacgaccagttcaagagattggcattcgatcgcacgcttgttagacattgtgattttgaaaaat gctacatgaccaaagatgttatgctcacagacttcatcaaatgcagctgtcactacatcgagtcccttagtctcaatcat tgctactggataacgggcaaaactatcgagacactgattcctaagtgtaaaaacattcgcaaactctcgcttctcgatat tagccttacgacaaagagaatttgtaaaattctctcttcactgccaaagttagaagctttagctttcaccattggaaaca ttgatgattttgataatcatctgaattccaatgaatctgctcagaaacaaatgtgtcagataaaacatttaacaatacat ttcaaagtggggatcacgcctaggactgaacaggcaatatcggtgcaatttattcagaaaaagacgtcttttttcgaaca ctgcaggaatttgactgaactcaacgttataggtcacccaaatttaggatgtgggcttccaaagcttctagttcaaccaa atgtggtcaaaatagaaaatttaaaacacttaaaagtgctttcactcaattacgccatcgatccagcagccagaatattt tactacggaactttgctgtcagtggccaaacttcagttgaagttacacacagtattaaatccatcagcaaattttgaaaa tcatatccgtaatgatttttggaggacattttggaactcccaagaagagctacggaatttagatttatcaaatacatcat taaagaatgtgttcccaacagtgtttgattcaacagttgtacgcaatagtttggtttatctgaacatctctgacacagac aacaaagactcgggtatgagtttacggacacttggacatgtctgtcctaatttacaggctttaaatgtgcggaacagcca tctagtttatgtagcctctgaccagaatcccccacagcctgatcatgtgatacaacaaccacaaagcatgaacaactttg atatagatggtttctccaccctagtcaacttgtgccaaaacttagtccaccttaacataagtaacactcatatccaccag ctaaatgtgtcagacagattctgtcatgctctaacacagctaaaaggtctgcagtcgttagctgtgtcaccctgctgctt tggtacacgaccagcgacgcaatcccatgattccaagacatcggagaaaacgggaatacagaatacagggatgaaacgtg cagcatcaaccatactaatgcagtacggaaaaaggaaaaggatagctcataacgcaggagtggatagtaacaatcagcct gtagcctcaacctcctcagccgctgaccctgtggttgtcgaggacttgacccctgaccccgccttggatacagcctgtaa ggaccttaagcttctcagtctacggacgggactacagttactgacggacgcatgtacgaacctaactcactttgagctga ttaacgcaggtttaatgcgaccagtcatacacagaggtcaaaatggtctcatgccaaagccttgcctttatataccatgt gccgagtcatacattgtgacggacagagagttgatgtatattagtaaactaaagaatctccgttatctacaactagctgg tctgccaggtataataactgggtcgttcctatcagtgatagccaaggaatgcccaaagttaagccagttacatcttgctt acctcggacttacagctcattgtatatacataggacagctttgtcaggcattctctcacttcactcacctacaggatctg aggttagagcatgcctacctttctatagactcaatattctgtaaagctgcccagcgatgtacgagtttacaacgtctctg tgtcgtatctaaaaatggaagcatagactctggtgctgtcatagactttgtttctaagttaccttccttggtggtgctac aactatttactgatgccacacagtatttgtgtaaaaagttacaaaaatctctcaaagaaagatttgagagttgccgtccg gccctgagtgtcagtatatggcctttgtttgatcaagatacggcacacgtcatgaacaccataccaacaaaacacctaga agaactgacaatattcagctccaaggttgcacaaagacctcataaacgattatga |
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Protein
| Protein ID | pfu_aug2.0_374.1_14065.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_374.1_14065.t1 MAVTNFHNFPDNLILEIFSYVSPTDLCNLYHVNDQFKRLAFDRTLVRHCDFEKCYMTKDVMLTDFIKCSCHYIESLSLNH CYWITGKTIETLIPKCKNIRKLSLLDISLTTKRICKILSSLPKLEALAFTIGNIDDFDNHLNSNESAQKQMCQIKHLTIH FKVGITPRTEQAISVQFIQKKTSFFEHCRNLTELNVIGHPNLGCGLPKLLVQPNVVKIENLKHLKVLSLNYAIDPAARIF YYGTLLSVAKLQLKLHTVLNPSANFENHIRNDFWRTFWNSQEELRNLDLSNTSLKNVFPTVFDSTVVRNSLVYLNISDTD NKDSGMSLRTLGHVCPNLQALNVRNSHLVYVASDQNPPQPDHVIQQPQSMNNFDIDGFSTLVNLCQNLVHLNISNTHIHQ LNVSDRFCHALTQLKGLQSLAVSPCCFGTRPATQSHDSKTSEKTGIQNTGMKRAASTILMQYGKRKRIAHNAGVDSNNQP VASTSSAADPVVVEDLTPDPALDTACKDLKLLSLRTGLQLLTDACTNLTHFELINAGLMRPVIHRGQNGLMPKPCLYIPC AESYIVTDRELMYISKLKNLRYLQLAGLPGIITGSFLSVIAKECPKLSQLHLAYLGLTAHCIYIGQLCQAFSHFTHLQDL RLEHAYLSIDSIFCKAAQRCTSLQRLCVVSKNGSIDSGAVIDFVSKLPSLVVLQLFTDATQYLCKKLQKSLKERFESCRP ALSVSIWPLFDQDTAHVMNTIPTKHLEELTIFSSKVAQRPHKRL |
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