Gene
| Gene Model ID | pfu_aug2.0_375.1_17343 |
|---|---|
| Locus | scaffold375.1 : 93240 ... 108155 : - |
| To GenomeBrowser | scaffold375.1:93240..108155 |
| Genes list of scaffold | scaffold375.1 |
| Synonym | pfu_aug1.0_25299.1_26234 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_375.1_17343.t1 | 1 | 1 | Neur_chan_LBD | 34 | 177 | 1.1e-24 | 86.7 | 1.0e-28 | 1.5e-24 | 86.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_375.1_17343.t1 | gi|291236520|ref|XP_002738191.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-2-like, partial [Saccoglossus kowalevskii] | 4.0e-14 |
| pfu_aug2.0_375.1_17343.t1 | gi|663292108|ref|XP_008502038.1| | PREDICTED: LOW QUALITY PROTEIN: neuronal acetylcholine receptor subunit alpha-7-like [Calypte anna] | 2.0e-13 |
| pfu_aug2.0_375.1_17343.t1 | gi|585646214|ref|XP_006811691.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-4-like [Saccoglossus kowalevskii] | 2.0e-13 |
| pfu_aug2.0_375.1_17343.t1 | gi|224088462|ref|XP_002187698.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Taeniopygia guttata] | 3.0e-13 |
| pfu_aug2.0_375.1_17343.t1 | gi|699686510|ref|XP_009904046.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Picoides pubescens] | 3.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_375.1_17343.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_375.1_17343.t1 atgacattgaaaatgaattctctgatatcaatctgtttctctacgtatttatttctgataggtgcatcttgtgattcaag attagaagttgtgcgtaaccttacggacaaacttgttcacatcaatagtcgtctaacagaaccgaacataaaaatggaaa gtcaaagttcaacacaagttcaaatgatcctcgacattcgtaatattatagactttgatgtatctaaaggaactttgaag atatttgccgtgctgacatggagttggacggaccttagtctgtcttgggatagagatgaatatccggtatactttgtccg tgtgtctaaagacagaatttggatgccacttgtatacatagagaacaccgcagaagggacgaatgctttgaccgttggtg agtcagtgtcagtttcatctggtgggtatgtggtttatgagacgccacaagtcattgatattctctgtacaccagatgta tcaaaatttcctttcgacgaacatgtttgtggtatgtacttcgcacctttgcttgacaactctggcttcggccttacgtg taatggaatggacttggaaaacctctgggacagctccatgtggaatgatttggttaccaaaggcacatgtgagttaaaga atatcctgacgatattctcaacagcacccataatagagcacaaaattgagcatcgacagacccctagcaagctagaggtg ggaccaggtgccctggagaggtgggaccaggtgcccgggaggagtaagcatcccttgttggctacccgcacccgccgtcg atgttcatgcaagaaatga |
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Protein
| Protein ID | pfu_aug2.0_375.1_17343.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_375.1_17343.t1 MTLKMNSLISICFSTYLFLIGASCDSRLEVVRNLTDKLVHINSRLTEPNIKMESQSSTQVQMILDIRNIIDFDVSKGTLK IFAVLTWSWTDLSLSWDRDEYPVYFVRVSKDRIWMPLVYIENTAEGTNALTVGESVSVSSGGYVVYETPQVIDILCTPDV SKFPFDEHVCGMYFAPLLDNSGFGLTCNGMDLENLWDSSMWNDLVTKGTCELKNILTIFSTAPIIEHKIEHRQTPSKLEV GPGALERWDQVPGRSKHPLLATRTRRRCSCKK |
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