Gene
| Gene Model ID | pfu_aug2.0_375.1_17346 |
|---|---|
| Locus | scaffold375.1 : 195662 ... 213667 : + |
| To GenomeBrowser | scaffold375.1:195662..213667 |
| Genes list of scaffold | scaffold375.1 |
| Synonym | pfu_aug1.0_1138.1_15364 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| lupus la protein | GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_375.1_17346.t1 | 1 | 1 | La | 45 | 103 | 1.1e-22 | 79.6 | 1.2e-25 | 2.2e-22 | 78.6 |
| pfu_aug2.0_375.1_17346.t1 | 2 | 1 | RRM_6 | 142 | 196 | 2.0e-15 | 56.5 | 1.4e-10 | 2.6e-07 | 30.4 |
| pfu_aug2.0_375.1_17346.t1 | 2 | 1 | RRM_1 | 142 | 196 | 6.8e-11 | 41.6 | 4.3e-11 | 8.1e-08 | 31.7 |
| pfu_aug2.0_375.1_17346.t1 | 2 | 1 | RRM_3 | 214 | 238 | 1.5e-24 | 85.8 | 0.74 | 1400.0 | -0.9 |
| pfu_aug2.0_375.1_17346.t1 | 2 | 2 | RRM_3 | 257 | 362 | 1.5e-24 | 85.8 | 8.0e-28 | 1.5e-24 | 85.8 |
| pfu_aug2.0_375.1_17346.t1 | 2 | 2 | RRM_6 | 260 | 329 | 2.0e-15 | 56.5 | 2.0e-08 | 3.8e-05 | 23.5 |
| pfu_aug2.0_375.1_17346.t1 | 2 | 2 | RRM_1 | 267 | 311 | 6.8e-11 | 41.6 | 0.0013 | 2.5 | 7.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_375.1_17346.t1 | gi|676488789|ref|XP_009064728.1| | hypothetical protein LOTGIDRAFT_132027, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_375.1_17346.t1 | gi|524912806|ref|XP_005111241.1| | PREDICTED: lupus La protein-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_375.1_17346.t1 | gi|291228703|ref|XP_002734313.1| | PREDICTED: lupus La protein homolog isoform X1 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_375.1_17346.t1 | gi|585657987|ref|XP_006815935.1| | PREDICTED: lupus La protein homolog isoform X3 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_375.1_17346.t1 | gi|632945629|ref|XP_007888160.1| | PREDICTED: lupus La protein [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_375.1_17346.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_375.1_17346.t1 atggctgatcaggaaatgcaagagaaggaaaaagaaaatggaggagtaaacaatgcagtggaaaataatgctgttaaaga agaagttaaagaagaggtcaaactcggacctcccaatggtcttgaaaagaaaataattaaacaaattgagtactacttcg gagacgtgaatctgcctcgtgatcgtttcctccaggatgcactcaaagaggaagatggctgggtgtcacttgccacaatg accaagtttaatcgtctgaagcagctaacaaccaaccacaaaattattgctaccgcattacggaagtcagattctggatt gattcaggtcagtaaagacaatatctttatccgacgaaatcccgaacgaccagtccctgaaaatacagaagaaagaagaa atgaaattaatgcccgaactgcatatgtgaaaggattcccagaaaatataacattagataaactcatccagttctttaat gcaatctcacccatcgacacagttttcatgagaagggatcaagagaaaaaattcaagggctcagtgtttgttaccttttg tgaacagagtagctgtgatagtttcctagccggaggagacgtcaaatatgacgatgtcgttttagcacgaaaacctagaa atgaatatttcaaactgaaagaagaagagaaaaaaattagaaagctagaacaacttagaaggaaaaaagaggaaatgcaa agacgcgaggctgaagaaagacaaaaagtcatggatacactaactccaggtgccattctccatttaaccggtattacatc agaggaagtgacaatggacgatttcaaaaattatttcagtgactacgcatctgttaaatgggtggattttaataaggggg ataaccaggcatggctacgttttgaggaggcgaacaaggcaagcgaagcacacaaggcagcattagaggctcacgataat aaactagaaatcggaggatgtgtcgtagaaggcagggtgctagaaggtgaagaagaaatagatcattggagaaaactatt caaagaaagagcagaaagactggcagatatcaaaaagaagaagaggcagagtcgagacagaaggggagggccaaggagaa agaagaggagagatgatagagatgataaaaaagatgacgatgatgaagaagacgatgacgacgacgatgatgatgatgac gacaaagaagatggcgatgaaggagatgatgcaggcgatgtgaaggaagaaccagccaaggatgactag |
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Protein
| Protein ID | pfu_aug2.0_375.1_17346.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_375.1_17346.t1 MADQEMQEKEKENGGVNNAVENNAVKEEVKEEVKLGPPNGLEKKIIKQIEYYFGDVNLPRDRFLQDALKEEDGWVSLATM TKFNRLKQLTTNHKIIATALRKSDSGLIQVSKDNIFIRRNPERPVPENTEERRNEINARTAYVKGFPENITLDKLIQFFN AISPIDTVFMRRDQEKKFKGSVFVTFCEQSSCDSFLAGGDVKYDDVVLARKPRNEYFKLKEEEKKIRKLEQLRRKKEEMQ RREAEERQKVMDTLTPGAILHLTGITSEEVTMDDFKNYFSDYASVKWVDFNKGDNQAWLRFEEANKASEAHKAALEAHDN KLEIGGCVVEGRVLEGEEEIDHWRKLFKERAERLADIKKKKRQSRDRRGGPRRKKRRDDRDDKKDDDDEEDDDDDDDDDD DKEDGDEGDDAGDVKEEPAKDD |
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