Gene
| Gene Model ID | pfu_aug2.0_375.1_17348 |
|---|---|
| Locus | scaffold375.1 : 233242 ... 247161 : - |
| To GenomeBrowser | scaffold375.1:233242..247161 |
| Genes list of scaffold | scaffold375.1 |
| Synonym | pfu_aug1.0_83945.1_13302 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_375.1_17348.t1 | 8 | 1 | zf-H2C2_2 | 420 | 429 | 1.9e-13 | 49.9 | 0.23 | 860.0 | 0.5 |
| pfu_aug2.0_375.1_17348.t1 | 8 | 2 | zf-H2C2_2 | 598 | 609 | 1.9e-13 | 49.9 | 4.0 | 15000.0 | -4.1 |
| pfu_aug2.0_375.1_17348.t1 | 6 | 1 | zf-C2H2_4 | 599 | 622 | 9.5e-09 | 34.9 | 0.0062 | 23.0 | 5.6 |
| pfu_aug2.0_375.1_17348.t1 | 6 | 1 | zf-C2H2 | 600 | 619 | 1.4e-13 | 50.3 | 0.018 | 67.0 | 4.1 |
| pfu_aug2.0_375.1_17348.t1 | 8 | 3 | zf-H2C2_2 | 735 | 750 | 1.9e-13 | 49.9 | 0.0049 | 18.0 | 5.8 |
| pfu_aug2.0_375.1_17348.t1 | 6 | 2 | zf-C2H2 | 740 | 762 | 1.4e-13 | 50.3 | 2.3e-07 | 0.00087 | 19.4 |
| pfu_aug2.0_375.1_17348.t1 | 6 | 2 | zf-C2H2_4 | 740 | 762 | 9.5e-09 | 34.9 | 0.00013 | 0.48 | 10.8 |
| pfu_aug2.0_375.1_17348.t1 | 8 | 4 | zf-H2C2_2 | 754 | 778 | 1.9e-13 | 49.9 | 1.3e-07 | 0.0005 | 20.2 |
| pfu_aug2.0_375.1_17348.t1 | 6 | 3 | zf-C2H2 | 768 | 790 | 1.4e-13 | 50.3 | 1.1e-07 | 0.00042 | 20.5 |
| pfu_aug2.0_375.1_17348.t1 | 6 | 3 | zf-C2H2_4 | 768 | 791 | 9.5e-09 | 34.9 | 9.9e-06 | 0.037 | 14.3 |
| pfu_aug2.0_375.1_17348.t1 | 8 | 5 | zf-H2C2_2 | 782 | 806 | 1.9e-13 | 49.9 | 1.2e-08 | 4.6e-05 | 23.5 |
| pfu_aug2.0_375.1_17348.t1 | 6 | 4 | zf-C2H2 | 796 | 818 | 1.4e-13 | 50.3 | 0.00012 | 0.45 | 10.9 |
| pfu_aug2.0_375.1_17348.t1 | 6 | 4 | zf-C2H2_4 | 796 | 818 | 9.5e-09 | 34.9 | 7.8e-05 | 0.29 | 11.5 |
| pfu_aug2.0_375.1_17348.t1 | 8 | 6 | zf-H2C2_2 | 812 | 834 | 1.9e-13 | 49.9 | 0.016 | 59.0 | 4.2 |
| pfu_aug2.0_375.1_17348.t1 | 6 | 5 | zf-C2H2 | 825 | 846 | 1.4e-13 | 50.3 | 0.00014 | 0.51 | 10.7 |
| pfu_aug2.0_375.1_17348.t1 | 6 | 5 | zf-C2H2_4 | 825 | 846 | 9.5e-09 | 34.9 | 0.0011 | 3.9 | 8.0 |
| pfu_aug2.0_375.1_17348.t1 | 8 | 7 | zf-H2C2_2 | 838 | 863 | 1.9e-13 | 49.9 | 1.8e-09 | 6.5e-06 | 26.1 |
| pfu_aug2.0_375.1_17348.t1 | 6 | 6 | zf-C2H2 | 852 | 871 | 1.4e-13 | 50.3 | 8.8e-06 | 0.033 | 14.5 |
| pfu_aug2.0_375.1_17348.t1 | 6 | 6 | zf-C2H2_4 | 852 | 874 | 9.5e-09 | 34.9 | 1.9e-05 | 0.071 | 13.4 |
| pfu_aug2.0_375.1_17348.t1 | 8 | 8 | zf-H2C2_2 | 866 | 880 | 1.9e-13 | 49.9 | 0.028 | 100.0 | 3.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_375.1_17348.t1 | gi|170172581|ref|NP_001116215.1| | PR domain zinc finger protein 4 [Danio rerio] | 0.0 |
| pfu_aug2.0_375.1_17348.t1 | gi|551491379|ref|XP_005797260.1| | PREDICTED: LOW QUALITY PROTEIN: PR domain zinc finger protein 4-like [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_375.1_17348.t1 | gi|548345604|ref|XP_005725213.1| | PREDICTED: PR domain zinc finger protein 4-like isoform X1 [Pundamilia nyererei] | 0.0 |
| pfu_aug2.0_375.1_17348.t1 | gi|499020183|ref|XP_004560874.1| | 0.0 | |
| pfu_aug2.0_375.1_17348.t1 | gi|557015615|ref|XP_006008265.1| | PREDICTED: PR domain zinc finger protein 4-like [Latimeria chalumnae] | 1.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_375.1_17348.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_375.1_17348.t1 atggatgatgacagaggagagatgctgtcggacactctgtctaccattaacattgatcaactgaccagttctgccatggg agccttcaaccaacatgtacaacacattgaccatgcacctagcatatcagatgttaatccagctgtggagaatacagtta caattaaggttccatcacagggcgtcccatcatctgtgtccttgtcaactgtcccactcatgctgtctgttagcaggtta aatacatctaattaccaaggtacactgccacctattctacctctaattcatcaaagtggactacacccagtccgtcagct gatctcccctgtgtatccagtagtatcttccaatacagtgtctcttctacagccaaagacatccattcataatgcactga attcctcaaaatctgacagtgaaaacctaccttctaagattgagataaatgcacagtccctcttggatagacaaactttg tcagacacgactccagggatatcaaacaccattacactagaaaacacctctacttccttaccaacattgtcagaaatagg actggctaacgtacagaaactgactagtgccttactttgtagtgcgaatggaaacatacaaagtatactatcacaaactg aatcagatcctgtaactggaaacctggtagacagcaccatagcatcaaccagtagtgacgtacagactgttctatctaac gttactcattccaacagtctgtatacggcagaaccaataacaaataacagtctgcttcttcaacagcttctaaacggaac ttttgaaaaccaacatattctggggcttcctctgtcaactcagggtcattcagacaaaaacacgctactcagtacaaatg tcggaaaaagtgagaatgaggaagataacgagaatggtatacattcccagcatgatgatgaggcagggggtatgccacgc ctatctgatgagttaggggctgccccaggactgggggagacaaccttgatgcccctgtcagagacaccactacatgggat agaggaaacaccttcagatggagtggtattcaatggagggttggatctcctcagtcttcagactcagcttttagggtcgt atttacagaccaataccgatttaggggacctgacatgtaatgcagggggtatgctggacgtgatgggaggtacagtcata cctcaagtacccatccagagtacagaatctcaagttgacacagatacagccaacagttttcctcactattgtgcagcgtg taacttgacactacaccagccctgtgatatccatgggaccaaggcataccatgtagtggacactcccaatatcatcctta gtaaagccagaatgtccctcccaaagtgtttgtacttgaaaccaacatcaacttcaagagctagatcggtccctgatggt gtttatgcttacaagaccataccatgtaacacaaagtttggtcctatgattggtaaagtgttggatcctgctgagaagaa aacaaagagattttcttttccagaatggaagatgaaagacaaaaatcagttttcatctatagtaatggaggatgaggagg aatgtaattggatgatgtttgtgcgtatcgctcgtacagtggagaaaattaacgtgcgtgcacatcaaataggaatgcat gtttatttctttgtgacaagagatatacaagaagatgaagaacttaatgtgtggttttctcaacattacagtaagatcac aaagctgccattgtctccagtaacagcaaaaatatgtgaatgtttgacatgtgcaacattgtttaagtcaaggacccagt taaatgcacactcctatgaagtgcatgggattatgaatttagacagaatgacaagtgaaaggagtgaaagggaggcaaac tctcacttaactcaagatgaaatttctgttatttgtggatccaggagtgttttaagtaaagaagcaattggtgacaagga cggaagtaaagaaacgcaatgtggaggggactctggtacagatgcacttaatggacattcagttatctgtggatctggag gggacacaagtacagaagctctcagtgggaattctgttatgtgtggatctggtgtggacttaagcacaaaaacactcagt gggcatccagttatttgtggatatagagtagaattgagtaaagaaacactcaatgttcataaatgtggacactgcaagaa aattttcaaggatctgagtaattttaagaagcatcaaaggatacatatgaatgaaagaaattacaagtgtgcagtgtgtc ataaaggtttcagacagaaaatccatctccaggttcacatggcgacgcacaacagtgagagacagttcaaatgtcagtac tgcacgaagacattttatcgtaaatatgattgtcaaactcacgagaagtggcacaatcctgaaaaaggcatgaggtgcca gtactgctacaaactcttctataagactcaaaacttcaaacgacatcttctaattcatacaggacagaaagacttcgaat gtcaaaagtgtgaaaaacgtttctacacaaaacagcatctgaagagacatgagggaaattgtaaaggagaaaggccatat ttatataacttagacgagaaagttgatttacagcaagttaataatgctagtgatactataccagcttaa |
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Protein
| Protein ID | pfu_aug2.0_375.1_17348.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_375.1_17348.t1 MDDDRGEMLSDTLSTINIDQLTSSAMGAFNQHVQHIDHAPSISDVNPAVENTVTIKVPSQGVPSSVSLSTVPLMLSVSRL NTSNYQGTLPPILPLIHQSGLHPVRQLISPVYPVVSSNTVSLLQPKTSIHNALNSSKSDSENLPSKIEINAQSLLDRQTL SDTTPGISNTITLENTSTSLPTLSEIGLANVQKLTSALLCSANGNIQSILSQTESDPVTGNLVDSTIASTSSDVQTVLSN VTHSNSLYTAEPITNNSLLLQQLLNGTFENQHILGLPLSTQGHSDKNTLLSTNVGKSENEEDNENGIHSQHDDEAGGMPR LSDELGAAPGLGETTLMPLSETPLHGIEETPSDGVVFNGGLDLLSLQTQLLGSYLQTNTDLGDLTCNAGGMLDVMGGTVI PQVPIQSTESQVDTDTANSFPHYCAACNLTLHQPCDIHGTKAYHVVDTPNIILSKARMSLPKCLYLKPTSTSRARSVPDG VYAYKTIPCNTKFGPMIGKVLDPAEKKTKRFSFPEWKMKDKNQFSSIVMEDEEECNWMMFVRIARTVEKINVRAHQIGMH VYFFVTRDIQEDEELNVWFSQHYSKITKLPLSPVTAKICECLTCATLFKSRTQLNAHSYEVHGIMNLDRMTSERSEREAN SHLTQDEISVICGSRSVLSKEAIGDKDGSKETQCGGDSGTDALNGHSVICGSGGDTSTEALSGNSVMCGSGVDLSTKTLS GHPVICGYRVELSKETLNVHKCGHCKKIFKDLSNFKKHQRIHMNERNYKCAVCHKGFRQKIHLQVHMATHNSERQFKCQY CTKTFYRKYDCQTHEKWHNPEKGMRCQYCYKLFYKTQNFKRHLLIHTGQKDFECQKCEKRFYTKQHLKRHEGNCKGERPY LYNLDEKVDLQQVNNASDTIPA |
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