Gene
| Gene Model ID | pfu_aug2.0_377.1_23948 |
|---|---|
| Locus | scaffold377.1 : 306473 ... 327505 : + |
| To GenomeBrowser | scaffold377.1:306473..327505 |
| Genes list of scaffold | scaffold377.1 |
| Synonym | pfu_aug1.0_21846.1_47482 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_377.1_23948.t1 | 2 | 1 | AAA_13 | 180 | 305 | 3.1e-07 | 29.2 | 4.9e-08 | 8.1e-06 | 24.5 |
| pfu_aug2.0_377.1_23948.t1 | 2 | 1 | Reo_sigmaC | 202 | 323 | 6.6e-07 | 28.8 | 6.5e-09 | 1.1e-06 | 28.1 |
| pfu_aug2.0_377.1_23948.t1 | 2 | 1 | Laminin_II | 209 | 287 | 3.0e-06 | 27.0 | 2.3e-07 | 3.8e-05 | 23.4 |
| pfu_aug2.0_377.1_23948.t1 | 3 | 1 | DUF948 | 218 | 284 | 7.4e-07 | 28.9 | 7.0e-08 | 1.1e-05 | 25.1 |
| pfu_aug2.0_377.1_23948.t1 | 3 | 2 | DUF948 | 244 | 296 | 7.4e-07 | 28.9 | 1.6e-05 | 0.0026 | 17.5 |
| pfu_aug2.0_377.1_23948.t1 | 2 | 2 | AAA_13 | 378 | 462 | 3.1e-07 | 29.2 | 0.0023 | 0.39 | 9.1 |
| pfu_aug2.0_377.1_23948.t1 | 2 | 2 | Reo_sigmaC | 380 | 402 | 6.6e-07 | 28.8 | 6.3 | 1000.0 | -1.5 |
| pfu_aug2.0_377.1_23948.t1 | 2 | 2 | Laminin_II | 383 | 429 | 3.0e-06 | 27.0 | 1.3 | 210.0 | 1.6 |
| pfu_aug2.0_377.1_23948.t1 | 3 | 3 | DUF948 | 412 | 461 | 7.4e-07 | 28.9 | 6.9 | 1100.0 | -0.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_377.1_23948.t1 | gi|526118514|ref|YP_008318360.1| | hypothetical protein [Bacillus phage phiNIT1] | 2.0e-07 |
Transcript
| Transcript ID | pfu_aug2.0_377.1_23948.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_377.1_23948.t1 atggctcacttggatgaagctcggtatggacggacgtgtctgttagtactgaatgtctgtcccttcacactcagacacgt catagatgatttttttacaaaacaaggatccctggatatacaagacttcctggagaagaaaaaacatgacctgtaccaca tcatggctaagaaatgttgttgtagacctattacaagccgctttactccaatgtaccgttcacagtgggatcttctttat aaaagaaatctatcgccatgtagaggaaaatgctcactgggaggggactgtccgtgtaagtttgatgcaatccctggtat aacgacaaatgttatggacataactttgtgctgtctggtcataaaaaatatttgccaaggtgccacaatcaacatgaccc acatagacaagatacgcggtataaggaataaactgatccatgctagcagtgccactttagatgaaccaacatacaatggt tactggagtgacgttaaaacagcgatacttgatctggctaatatggtttcacctacagtgcatgcagacacagtcaaaat gatacaagatcttgagactcgagtgatgaatagatatgaattagaagagctgaagaaagtaattgtcacattacaaaaag tagaggagagagtatctgaggtagagaaggatcttgagaaaacaaacaaaagtgttgaacatgtagaagaagatgtgaac cggatagaagaagatgtgaaccagatagaagaagatgtgaaccggatagaagaagatgtgaaccagatagaagaagatgt gaaccgtatagaagaagatgtgaaccagttggaaggaaatataagccatattgctgcagaagttacaaaacaaggagagt cgtctaaaagaaaaatatcagatttaaatgacaaaattggaaacaagaactcaatgctgtctaccaagtttgtgtttttc gagccgatccgaaatccaagatggcgaccacaggctaaaaccactgcacaaaatttcatgaaacttcacaatcggtcaac agatatggccactgagggctctgattggctgatgcattttcgacttctcctctgcaactgctgcccagaatttcaagaaa ttctaacaggaagagagcacgatcagaagataaagcaaataaaacaagaatttgactccagaacagataacatatcagat gaccatggcagacagatagatgactatggcagacagatagatgatcatggcagacagatagatgatcatggcagacagat agatgaccatggcagacagatagatgactatggcagacagatagatgatcatggcagacagatagatgaacaagcgaaac agattgcagacattaaacaaagtattccatatggcaaagtaccccctagacaggctgtcagtcgccatatacaatag |
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Protein
| Protein ID | pfu_aug2.0_377.1_23948.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_377.1_23948.t1 MAHLDEARYGRTCLLVLNVCPFTLRHVIDDFFTKQGSLDIQDFLEKKKHDLYHIMAKKCCCRPITSRFTPMYRSQWDLLY KRNLSPCRGKCSLGGDCPCKFDAIPGITTNVMDITLCCLVIKNICQGATINMTHIDKIRGIRNKLIHASSATLDEPTYNG YWSDVKTAILDLANMVSPTVHADTVKMIQDLETRVMNRYELEELKKVIVTLQKVEERVSEVEKDLEKTNKSVEHVEEDVN RIEEDVNQIEEDVNRIEEDVNQIEEDVNRIEEDVNQLEGNISHIAAEVTKQGESSKRKISDLNDKIGNKNSMLSTKFVFF EPIRNPRWRPQAKTTAQNFMKLHNRSTDMATEGSDWLMHFRLLLCNCCPEFQEILTGREHDQKIKQIKQEFDSRTDNISD DHGRQIDDYGRQIDDHGRQIDDHGRQIDDHGRQIDDYGRQIDDHGRQIDEQAKQIADIKQSIPYGKVPPRQAVSRHIQ |
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