Gene
| Gene Model ID | pfu_aug2.0_3770.1_02489 |
|---|---|
| Locus | scaffold3770.1 : 14196 ... 21241 : + |
| To GenomeBrowser | scaffold3770.1:14196..21241 |
| Genes list of scaffold | scaffold3770.1 |
| Synonym | pfu_aug1.0_11283.1_68301 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3770.1_02489.t1 | 2 | 1 | AIG1 | 20 | 218 | 0.0 | 198.7 | 0.0 | 0.0 | 198.7 |
| pfu_aug2.0_3770.1_02489.t1 | 3 | 1 | MMR_HSR1 | 20 | 91 | 7.8e-07 | 29.0 | 5.1e-10 | 1.1e-06 | 28.6 |
| pfu_aug2.0_3770.1_02489.t1 | 3 | 2 | MMR_HSR1 | 149 | 193 | 7.8e-07 | 29.0 | 0.036 | 76.0 | 3.2 |
| pfu_aug2.0_3770.1_02489.t1 | 3 | 3 | MMR_HSR1 | 288 | 288 | 7.8e-07 | 29.0 | 0.51 | 1100.0 | -0.5 |
| pfu_aug2.0_3770.1_02489.t1 | 2 | 2 | AIG1 | 307 | 335 | 0.0 | 198.7 | 0.56 | 1200.0 | -1.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3770.1_02489.t1 | gi|556730020|ref|XP_005985767.1| | PREDICTED: LOW QUALITY PROTEIN: GTPase, IMAP family member 4 [Pantholops hodgsonii] | 0.0 |
| pfu_aug2.0_3770.1_02489.t1 | gi|548533812|ref|XP_005701564.1| | PREDICTED: GTPase IMAP family member 4-like [Capra hircus] | 0.0 |
| pfu_aug2.0_3770.1_02489.t1 | gi|741876772|ref|XP_010825782.1| | PREDICTED: GTPase IMAP family member 4 [Bos taurus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3770.1_02489.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3770.1_02489.t1 atgtactttgaattctttattcaaaaaagatcattgacggcggtgagtaacgaagtcaggattgtgctgattggaaaaac gggccatggaaaaagtgcacttggaaactccattcttggaaaagatatttttcagtcggtaccatctgccgtgtctgtaa caaaggaagttagctttggacgcgcaactcgatttggcagaaacctacttgtcgttgatacacctgggcttttcgataca aatgtaactaatgacgagacccttaacgagataggaaagtgcgttggtatatctgctccaggaatccatgctgctattct tgtgacatcaataggccgtgtcaccccagaagatcaaaaatcgttcgatatcttcgtgagatattttggtgaagatgtct gtaaatttacaatccttgtcttcaacaggtcaaaagacttgaaaggaatagagttcaaaaactacttagataacgcacat gaatctttccagaaactgcgacaaaaaattgatgatcgaatcttccttattgacaataatgagaaaaggaaaaagaagga aaagaaaattccagaacttttaaaaatgatcgactcgatggttacatcaaataatggagagtactacacaaatgaaatgt accgtaaagccgaactgttgataaaagaagaggagttgcgtagaagaaatgaaaccgaaaaacgaaaagagaaagagaga agaaaagttgcggagccattcctgaaaaagctaaaagagcgcgatgccctagttgaaaaattggaaagaagtcactctct cgctacgatgaaggcggatgacttgtcaaaacaacttcatgaagagaaaagaaagcttgaaactctacaacacgagaaac acattcatgaacttaagttagaaaatcttcaagagaaaataaattccatgacactcagggaaacagaaaggagtaagcaa atagaggacatgaaaacagtatttgattctttgcttcacaaaaaggacaaagacagcgaagtcaagaaaaaagtagaaga atctttactatttcaacgtgaaattgttctcgatattgaagaagagctacacaaacgctacgaagagaggaatcgtattc gggaagatgtgaaaagtgaagtctacaaggaagaattggaaaggaggaaaaacaaatgtagcatatcctag |
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Protein
| Protein ID | pfu_aug2.0_3770.1_02489.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3770.1_02489.t1 MYFEFFIQKRSLTAVSNEVRIVLIGKTGHGKSALGNSILGKDIFQSVPSAVSVTKEVSFGRATRFGRNLLVVDTPGLFDT NVTNDETLNEIGKCVGISAPGIHAAILVTSIGRVTPEDQKSFDIFVRYFGEDVCKFTILVFNRSKDLKGIEFKNYLDNAH ESFQKLRQKIDDRIFLIDNNEKRKKKEKKIPELLKMIDSMVTSNNGEYYTNEMYRKAELLIKEEELRRRNETEKRKEKER RKVAEPFLKKLKERDALVEKLERSHSLATMKADDLSKQLHEEKRKLETLQHEKHIHELKLENLQEKINSMTLRETERSKQ IEDMKTVFDSLLHKKDKDSEVKKKVEESLLFQREIVLDIEEELHKRYEERNRIREDVKSEVYKEELERRKNKCSIS |
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