Gene
| Gene Model ID | pfu_aug2.0_3790.1_02492 |
|---|---|
| Locus | scaffold3790.1 : 1 ... 11095 : - |
| To GenomeBrowser | scaffold3790.1:1..11095 |
| Genes list of scaffold | scaffold3790.1 |
| Synonym | pfu_aug1.0_6457.1_16928 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| actin-related protein partial | GO:0005634 GO:0006338 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3790.1_02492.t1 | 1 | 1 | Actin | 5 | 254 | 0.0 | 171.5 | 0.0 | 0.0 | 171.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3790.1_02492.t1 | gi|676474699|ref|XP_009060226.1| | hypothetical protein LOTGIDRAFT_229086 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3790.1_02492.t1 | gi|41054411|ref|NP_955990.1| | actin-related protein 6 [Danio rerio] | 0.0 |
| pfu_aug2.0_3790.1_02492.t1 | gi|573890725|ref|XP_006633123.1| | PREDICTED: actin-related protein 6-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_3790.1_02492.t1 | gi|695162751|ref|XP_009509677.1| | PREDICTED: actin-related protein 6, partial [Phalacrocorax carbo] | 0.0 |
| pfu_aug2.0_3790.1_02492.t1 | gi|697020344|ref|XP_009571666.1| | PREDICTED: actin-related protein 6, partial [Fulmarus glacialis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3790.1_02492.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3790.1_02492.t1 atgtttggaaaagatttcttaaaggttgactttaatgagacaaatatagtggtaacagagccgtattttaacttcagttc cgtacaagaagctatgaatgaagttttctttgaggagtatgcatttaaatctgtattaagaaccaatgcatcccatctaa ttcagcataagtaccacaaagatcagaattcccctcacccttgttctatgatcgtagactcagggtattccttcacacat attattccctactaccatggcaaaaagcttactccagctgtcaaaagggtcaatgttggagggaaagtgttaacaaatca tttgaaagaaattatctcctacagacagttgatggttatggacgagacatacgttataaatcagctgaaggaagatgtct gttacgtgtccacacagttctccaaggatatggagatagctaagagaagaggaaaggagaatataatagccagggactat gtattacctgattatacacatataaaaaggggatatgttagaccactcgaagagactaccggccgtgccaaggacggaga acagattatacgtatgaccaatgagcgttttgctgtaccagagctcctgttccacccttcagatgttggtattcaagaaa tgggcatagctgaggctttagtgtatgctataggcactctaccagaagacatgcagccacatatgtatgagaatattgta ctgacagggggaaactgtttgttgccgggattctatgatagatt |
|
Protein
| Protein ID | pfu_aug2.0_3790.1_02492.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3790.1_02492.t1 MFGKDFLKVDFNETNIVVTEPYFNFSSVQEAMNEVFFEEYAFKSVLRTNASHLIQHKYHKDQNSPHPCSMIVDSGYSFTH IIPYYHGKKLTPAVKRVNVGGKVLTNHLKEIISYRQLMVMDETYVINQLKEDVCYVSTQFSKDMEIAKRRGKENIIARDY VLPDYTHIKRGYVRPLEETTGRAKDGEQIIRMTNERFAVPELLFHPSDVGIQEMGIAEALVYAIGTLPEDMQPHMYENIV LTGGNCLLPGFYDR |
|