Gene
| Gene Model ID | pfu_aug2.0_3790.1_02493 |
|---|---|
| Locus | scaffold3790.1 : 14646 ... 35442 : + |
| To GenomeBrowser | scaffold3790.1:14646..35442 |
| Genes list of scaffold | scaffold3790.1 |
| Synonym | pfu_aug1.0_15425.1_10815 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3790.1_02493.t1 | 1 | 1 | F-box | 436 | 478 | 4.5e-07 | 29.3 | 2.9e-10 | 8.6e-07 | 28.4 |
| pfu_aug2.0_3790.1_02493.t1 | 1 | 1 | F-box-like | 438 | 476 | 4.3e-08 | 32.7 | 3.4e-11 | 1.0e-07 | 31.5 |
| pfu_aug2.0_3790.1_02493.t1 | 5 | 1 | WD40 | 519 | 549 | 2.7e-38 | 128.4 | 2.5e-11 | 7.4e-08 | 31.9 |
| pfu_aug2.0_3790.1_02493.t1 | 3 | 1 | Nup160 | 532 | 558 | 1.9e-08 | 32.9 | 6.3e-05 | 0.19 | 9.8 |
| pfu_aug2.0_3790.1_02493.t1 | 5 | 2 | WD40 | 553 | 590 | 2.7e-38 | 128.4 | 1.1e-12 | 3.4e-09 | 36.2 |
| pfu_aug2.0_3790.1_02493.t1 | 3 | 2 | Nup160 | 574 | 608 | 1.9e-08 | 32.9 | 0.00096 | 2.8 | 5.9 |
| pfu_aug2.0_3790.1_02493.t1 | 5 | 3 | WD40 | 594 | 630 | 2.7e-38 | 128.4 | 8.6e-09 | 2.6e-05 | 23.9 |
| pfu_aug2.0_3790.1_02493.t1 | 3 | 3 | Nup160 | 617 | 740 | 1.9e-08 | 32.9 | 1.5e-06 | 0.0045 | 15.1 |
| pfu_aug2.0_3790.1_02493.t1 | 5 | 4 | WD40 | 637 | 672 | 2.7e-38 | 128.4 | 5.1e-12 | 1.5e-08 | 34.1 |
| pfu_aug2.0_3790.1_02493.t1 | 5 | 5 | WD40 | 749 | 762 | 2.7e-38 | 128.4 | 0.024 | 71.0 | 3.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3790.1_02493.t1 | gi|676474702|ref|XP_009060227.1| | hypothetical protein LOTGIDRAFT_154278 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3790.1_02493.t1 | gi|291233221|ref|XP_002736552.1| | PREDICTED: F-box/WD repeat-containing protein 7-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_3790.1_02493.t1 | gi|115913954|ref|XP_800063.2| | PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_3790.1_02493.t1 | gi|261289637|ref|XP_002604795.1| | hypothetical protein BRAFLDRAFT_206373 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_3790.1_02493.t1 | gi|198431659|ref|XP_002125830.1| | PREDICTED: F-box/WD repeat-containing protein 7 [Ciona intestinalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3790.1_02493.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3790.1_02493.t1 atgttgaccataacgactctgtcaggatggaaacccctggacatcatatcaaagccggagtttgatgagggcgatcccta tagattcaagcggcgtctacccaaggaaccagagcctcctccccctagaaggaagactcctgatgtaccaagctggaggg gacatgggggacgggcagctacctatagcagtgtggagtttgatagacaactggataaaatatcaatgtggatagaaaag tggaatcacatacagagatgtcagctgatagaatggatattacgtaagagtaaccacaatcagttccagttcctatatac ggccatgcagccccacctccacagggatctgatgtacaccgcccagtcccgatacccctccatggagttcaaaccattct ctacacattccagcagggaagtacagcgaaaattgatacttcataggcaagacgatttttaccgagtaaagagtggttac ttccggttggatgatgatgtgaaaaaccaagcgcgggaaaaacaatccgtcaaatttccaaatatacctatagaaaaacc aacacctgatccaagactacagagagttaccacagatttcagctccttgtcgaatcccccagtatcaagggggtctacnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnntaatcccccaccctcccgggcgtctactggtatgcttcccttcctaacgttgccaaggaaacaaaaacata gcaacttgaaaacaaagaaaagactcaatgaaccgctcatggccaatgatccagaattactgtataaaagtgatccgact ctaaggtttgttgacatgccgatgaggagacatatacaggacgagagcaatcctaaaagtttattgggatcagtgacaaa tctggatgacttcaaacaacaaacacaaaaaatacctaacaaagtcgtgtcgtttaatatacttcctgataagaaaaata tcaagaatgattcagacatcttagtgcagctagacgaggaaggaatgaccgtactggattggtacgtcactgagtggaca gatgtgaagagaaatgaatttctgcacaaattcattctcaaattagacccccgtcagcattactttatctcaagctttct ctcagttcgacagcaccgagattttcttgccctcttaccagaaaacgtcgccttgaagattctaggctacctaactccga aagaaatactcacatgtagtcgggtgagtaagacttggttcaaactggccaataacaatgacgtgtggatgaatgaatgt aaggaaatagacatcaaggttcccatcccatccaaccctaactggaaacacgtctacagggataacatgtatttgaaaat caactgggaaaatggcgactgtcgaatgttggatctacggggacacactgaccaagtggaagagattatattcaacaata agtaccttgccagtggaagtcaagacaaaacaatcaaaatctgggaccttcgtaatgggaagttactccagaccctcgtg ggtcacaaaaagggggtgtggtgcctcaacttttatacaaagagtctcattgtcagcggatctcacgatggaaccataaa ggtatggaatatgaagatgggactgtgtttacggaccattataggtcacgacggtcctgtatgggcaatggtccgccacg aaaacacgcttgtcagcacgtcacaggataaaatggctaagatatgggatatttcacgttgtatccacctacacaccttg gcaggtcatggggctgctgtgttcgccgtagatatgagtgagaatggttcactggttataacaggatcagccgataagac tgttagaatttggagcacagagaccgggaagcagttacagagaatctgggcgagtcagacaacttccatcatggcggtca gctatagtcagggttatatagcctacagttatggagaaacgatatgtctgtacaataccaacccaaaagccaagaaaaga ctagtcagatcttacgaagagcactcgaaaagaacagaaacggtgcgacttaaaataacagataaagaaaatctagaagg tagcataattagtgctgggaaagatgcaatggtcaaatattgggacgttaaaaagtaa |
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Protein
| Protein ID | pfu_aug2.0_3790.1_02493.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3790.1_02493.t1 MLTITTLSGWKPLDIISKPEFDEGDPYRFKRRLPKEPEPPPPRRKTPDVPSWRGHGGRAATYSSVEFDRQLDKISMWIEK WNHIQRCQLIEWILRKSNHNQFQFLYTAMQPHLHRDLMYTAQSRYPSMEFKPFSTHSSREVQRKLILHRQDDFYRVKSGY FRLDDDVKNQAREKQSVKFPNIPIEKPTPDPRLQRVTTDFSSLSNPPVSRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPPSRASTGMLPFLTLPRKQKHSNLKTKKRLNEPLMANDPELLYKSDPT LRFVDMPMRRHIQDESNPKSLLGSVTNLDDFKQQTQKIPNKVVSFNILPDKKNIKNDSDILVQLDEEGMTVLDWYVTEWT DVKRNEFLHKFILKLDPRQHYFISSFLSVRQHRDFLALLPENVALKILGYLTPKEILTCSRVSKTWFKLANNNDVWMNEC KEIDIKVPIPSNPNWKHVYRDNMYLKINWENGDCRMLDLRGHTDQVEEIIFNNKYLASGSQDKTIKIWDLRNGKLLQTLV GHKKGVWCLNFYTKSLIVSGSHDGTIKVWNMKMGLCLRTIIGHDGPVWAMVRHENTLVSTSQDKMAKIWDISRCIHLHTL AGHGAAVFAVDMSENGSLVITGSADKTVRIWSTETGKQLQRIWASQTTSIMAVSYSQGYIAYSYGETICLYNTNPKAKKR LVRSYEEHSKRTETVRLKITDKENLEGSIISAGKDAMVKYWDVKK |
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