Gene
| Gene Model ID | pfu_aug2.0_3794.1_15860 |
|---|---|
| Locus | scaffold3794.1 : 1 ... 8975 : - |
| To GenomeBrowser | scaffold3794.1:1..8975 |
| Genes list of scaffold | scaffold3794.1 |
| Synonym | pfu_aug1.0_16936.1_54358 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3794.1_15860.t1 | 3 | 1 | VCBS | 138 | 155 | 1.2e-08 | 35.1 | 0.00062 | 1.0 | 9.7 |
| pfu_aug2.0_3794.1_15860.t1 | 4 | 1 | FG-GAP | 141 | 157 | 9.0e-06 | 25.2 | 0.0012 | 2.0 | 8.2 |
| pfu_aug2.0_3794.1_15860.t1 | 3 | 2 | VCBS | 145 | 203 | 1.2e-08 | 35.1 | 1.2e-05 | 0.019 | 15.2 |
| pfu_aug2.0_3794.1_15860.t1 | 4 | 2 | FG-GAP | 189 | 206 | 9.0e-06 | 25.2 | 0.00095 | 1.6 | 8.5 |
| pfu_aug2.0_3794.1_15860.t1 | 3 | 3 | VCBS | 270 | 331 | 1.2e-08 | 35.1 | 3.6e-06 | 0.006 | 16.9 |
| pfu_aug2.0_3794.1_15860.t1 | 4 | 3 | FG-GAP | 270 | 282 | 9.0e-06 | 25.2 | 0.13 | 210.0 | 1.7 |
| pfu_aug2.0_3794.1_15860.t1 | 4 | 4 | FG-GAP | 321 | 333 | 9.0e-06 | 25.2 | 0.0021 | 3.5 | 7.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3794.1_15860.t1 | gi|585686388|ref|XP_006820321.1| | PREDICTED: protein ITFG3-like [Saccoglossus kowalevskii] | 1.00053e-42 |
| pfu_aug2.0_3794.1_15860.t1 | gi|260824451|ref|XP_002607181.1| | hypothetical protein BRAFLDRAFT_68024 [Branchiostoma floridae] | 9.99967e-42 |
Transcript
| Transcript ID | pfu_aug2.0_3794.1_15860.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3794.1_15860.t1 atgaagaaggcggtctccaaagatgagtacgccagggttcctctggtggttggcgacgactcggacctggatacggagct gtttgatcaaaaacaaagtaggattggacacagaaaggcccagttcaagaacaggcttcttttgatatgtgtatcagctt gtatcgtccttctagtcacccttattgtaagcctattttacgtgttcttacaaaacaagtcccaggataagactccttcc aacatcagcgttgtatcatcgtcatcgtcacaactcgaggtcggtgtcaaccatgtacagtcacaacatgcttcagaccc aaagaacagtccgtccatcaccccacgaccgaaagcaggaccacacccaaaaactaaagactgggaacgagtatttgtag acctgggttctgagtctgtgattcgattggttgatattgatggtgacggaggtcaagatattatattcggagcggccaaa tctgctgatctaaatacgatacagggaataacagaggaagggagccttgtcaagtactgccagtctataggttctgagtc tgtgattcgattggttgatattgatggtgatggaggtcaagatattatattcggagcggctaactctgctgatctaaata cgatacagggaataacagaggaagggagccttgtcaaatactgccagtctataggaaaaccatacccttgtattggcatc atttttgcgctaaatggcaaagatggaagtacaatgtggacagcaaaaacaagatctggtgcactgctccttaactgtgt ggactttgatgtcaataaagacggtaccaaggattgtatcattacaggcagacaggccatggtggaggccatcaatgtca agaacggtgagcacttatggacaggtaacagagacaagtttatgaagacatggaacatttaccaggccatgccgttacct gactttaacaaagacggagtaaatgaggtgctgatagtccatggtggagatcctaactttgaatcaaatgagaaaaaccg ccactctgccagactgattatgctgaatggtgctacaggagaggtgatgggtcggtactttgaatttcctggacacaagg agagttaccagagtcctgttatgtatacagctccggatggatctcagtatatactgttaggtagtggaggggaaactata gaag |
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Protein
| Protein ID | pfu_aug2.0_3794.1_15860.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3794.1_15860.t1 MKKAVSKDEYARVPLVVGDDSDLDTELFDQKQSRIGHRKAQFKNRLLLICVSACIVLLVTLIVSLFYVFLQNKSQDKTPS NISVVSSSSSQLEVGVNHVQSQHASDPKNSPSITPRPKAGPHPKTKDWERVFVDLGSESVIRLVDIDGDGGQDIIFGAAK SADLNTIQGITEEGSLVKYCQSIGSESVIRLVDIDGDGGQDIIFGAANSADLNTIQGITEEGSLVKYCQSIGKPYPCIGI IFALNGKDGSTMWTAKTRSGALLLNCVDFDVNKDGTKDCIITGRQAMVEAINVKNGEHLWTGNRDKFMKTWNIYQAMPLP DFNKDGVNEVLIVHGGDPNFESNEKNRHSARLIMLNGATGEVMGRYFEFPGHKESYQSPVMYTAPDGSQYILLGSGGETI E |
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