Gene
| Gene Model ID | pfu_aug2.0_38.1_26712 |
|---|---|
| Locus | scaffold38.1 : 197009 ... 210739 : - |
| To GenomeBrowser | scaffold38.1:197009..210739 |
| Genes list of scaffold | scaffold38.1 |
| Synonym | pfu_aug1.0_5830.1_09224 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_38.1_26712.t1 | 2 | 1 | tRNA-synt_2 | 43 | 75 | 0.0 | 266.7 | 0.66 | 3300.0 | -3.5 |
| pfu_aug2.0_38.1_26712.t1 | 2 | 1 | tRNA_anti-codon | 47 | 92 | 3.0e-11 | 43.0 | 0.18 | 910.0 | -0.2 |
| pfu_aug2.0_38.1_26712.t1 | 2 | 2 | tRNA_anti-codon | 117 | 197 | 3.0e-11 | 43.0 | 4.4e-14 | 2.2e-10 | 40.2 |
| pfu_aug2.0_38.1_26712.t1 | 2 | 2 | tRNA-synt_2 | 216 | 530 | 0.0 | 266.7 | 0.0 | 0.0 | 266.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_38.1_26712.t1 | gi|676439781|ref|XP_009048963.1| | hypothetical protein LOTGIDRAFT_200884 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_38.1_26712.t1 | gi|524876251|ref|XP_005094844.1| | PREDICTED: asparagine--tRNA ligase, cytoplasmic-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_38.1_26712.t1 | gi|195580101|ref|XP_002079894.1| | GD21774 [Drosophila simulans] | 0.0 |
| pfu_aug2.0_38.1_26712.t1 | gi|195345035|ref|XP_002039081.1| | GM17026 [Drosophila sechellia] | 0.0 |
| pfu_aug2.0_38.1_26712.t1 | gi|114052923|ref|NP_001040037.1| | asparagine--tRNA ligase, cytoplasmic [Bos taurus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_38.1_26712.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_38.1_26712.t1 atggacgagatgggagatcaagtaaaaaacatgacagttggtgaaatatacacctctgaaaaatctggatcagatgaaag tggaaatggctcgncaatctacgtagattccaaagaagagaacaagaaatatgatgtggcatcaaagtcccaactaaaga agatacataagatctgggtacgagatcaacacaagtccacagacaaagcagccagggaggcagaagatgcagagaaaaga agagagaacttggaagaagccaagaagattaagatagaacaagatccctctctccctgctcctaaacagatcaaaatcag agatacggtacaaacacgagatgtacgagtgaagatatatggctgggtccatagactgcgtagacaggggaggacattga tgtttatagtgttacgtgacggtaccggttttctacaatgtgttctttcagacaaattgtgtcagacgtatgatgcccta ctactggccactgaagctgccatctgtgtatatggtgttatatcagccgtaccagaaggaaaaactgcaccagatggtca tgaactgacggcagactactgggagttgattggagaatcaccaccagggggagctgataacattctcaacgaggaagcca acgtggacgtacagctcgacaacagacacatgatgatcagaggagaaaacacagctaaggtgttgaagatgcgctctata atcatgcagtgttttagggaccatttctttaacaggggatacatcgaggtgacgccacctacattagtacaaactcaggt tgaaggaggagcaactttatttaaactaaattattttggagatgaggcctatttaacccagtcgtcccagctctatctag agacatgcttgccagccatgggagatgtgttttgtatagctcagtcataccgagcggaaatgtccaggacaaggagacat ctagcagagtatacgcatatagaagcagaatgtccgtttattacatttgatgaaatgttagaccgattagaggatcttgt atgtgatgtagtagatagagtactcaaatcaccgtatggaaagattgttagcgaacttaaccctaacttcaaacctccga aaaagccattcaaaagaatgaactacagtgatgcagtgaaatacctcaaggaacatgacatcaaaaaagatgatggtact tactatgaatttggagaggatataccagaggcccctgagaggaagatgacagatcagattaacgagccgatattactgtg tcgatttccggcagaaatcaagtccttctacatgcaaaggtgtgcagatgatcccagactcacagaatctgtagatgtac taatgccaaatgtaggagagatagtaggtggatctatgaggatatataaacatcaggagctgatggagggattccaaaga gaagggatagatactaccaattactactggtatactgaccagaggaagtacggtacatgtccccacggtggttatggttt gggacttgagcggttcatgtgctggttactggaccgttaccacatcagagaagtcgttctctacccaagatttgtcgaga ggtgtaaaccttag |
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Protein
| Protein ID | pfu_aug2.0_38.1_26712.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_38.1_26712.t1 MDEMGDQVKNMTVGEIYTSEKSGSDESGNGSXIYVDSKEENKKYDVASKSQLKKIHKIWVRDQHKSTDKAAREAEDAEKR RENLEEAKKIKIEQDPSLPAPKQIKIRDTVQTRDVRVKIYGWVHRLRRQGRTLMFIVLRDGTGFLQCVLSDKLCQTYDAL LLATEAAICVYGVISAVPEGKTAPDGHELTADYWELIGESPPGGADNILNEEANVDVQLDNRHMMIRGENTAKVLKMRSI IMQCFRDHFFNRGYIEVTPPTLVQTQVEGGATLFKLNYFGDEAYLTQSSQLYLETCLPAMGDVFCIAQSYRAEMSRTRRH LAEYTHIEAECPFITFDEMLDRLEDLVCDVVDRVLKSPYGKIVSELNPNFKPPKKPFKRMNYSDAVKYLKEHDIKKDDGT YYEFGEDIPEAPERKMTDQINEPILLCRFPAEIKSFYMQRCADDPRLTESVDVLMPNVGEIVGGSMRIYKHQELMEGFQR EGIDTTNYYWYTDQRKYGTCPHGGYGLGLERFMCWLLDRYHIREVVLYPRFVERCKP |
|